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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0104800 |
| Transcript ID | LotjaGi6g1v0104800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tyrosine--tRNA ligase; TAIR: AT3G02660.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; Swiss-Prot: sp|Q9M876|SYYM_ARATH Tyrosine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072UXA5|A0A072UXA5_MEDTR Tyrosine--tRNA ligase; Found in the gene: LotjaGi6g1v0104800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:23057882..23059822) extracted from Lotus japonicus Gifu genome v1.2.
GGCAAAACCAATTAAACTTTAAGTCTTTAACTCTCTCACTTGACATCCGAAAACCTCAACTAGCTAAACCATGGCCACCA ATTTTGCTTCAAGGACCATCCTCTCGTCTCATTCGACCAAGCTCTTCATCCTTCCTTTGAAACCTCCTTCTTCCCATGCT TCCTTCTCTATCCCTTTCTGTTTCACAAGAACCACCTGCACTCTACAGCCCCTACAACAACAACAGCAGCAACAACAACG TCAACATGGTCGCAGTGTCATCGGAATCCTCGAACAAAGGGGGCTACTCGAGTCCATTACCAGCGATGCTCTCAGAACCG CTTCTTCAAACGCCATTGATGCACCCCTCAAGGTCTACTGCGGATTTGACCCCACTGCCGAGAGTTTGCACTTGGGTAAC CTTCTGGGTATCATTGTTCTCTCCTGGTTCCGCCGTTGCGGCCATAATGTCGTCGCTTTGATTGGAGGTGCCACTGCACG CGTTGGCGACCCATCTGGGAAGAGCCTCGAAAGGCCCGAGCTGGATGTCGAAACGTTGGAGAGGAACACTGCTGGTATTG AAAACACCATCAGAACAATCTTGGGTCGTGCTCAAAATCTCAACTTGGAGGAGTTGAGTGTGGGTGATGGTAATTTGTGT GATTCTTCTGTTGTGGTTTTGAACAATTATGATTGGTGGAAGGAGTTTAGTTTGTTGGATTTTCTGAAACGGGTGGGGAA ATATGCTAGGGTGGGTTCAATGATGGCTAAGGAGAGTGTGAGGAAGAGGTTGGATTCTGAACAAGGGATGAGTTATACAG AGTTCACCTACCAGTTGTTGCAGGGGTATGATTTCTTGCACTTGTTTCAGAATGAGGGTGTTACTGTTCAAATTGGGGGT AGTGATCAGTGGGGCAATATAACAGCTGGGACTGAGTTAGTTAGAAAGATATTGCAGGTTGAGAGTGCTGTTTATGGCTT CACATTTCCTCTTTTATTGAAAAGTGATGGTACAAAATTTGGTAAATCTGAGGATGGTGCTATTTGGTTATCTCCATCCT TGTTATCTCCATACAAATTTTACCAGTATTTTTTCTCTGTTCCGGATGCTGATGTGGTTAGGTTCCTGAAAATTCTTACT TTTTTGGATATTGAAGAGATTGTTAAGTTGGAGGAAGAGATGGTGAAACCTGGGTATGTGCCTAATACTGCTCAGCGGAG GCTTGCTGAAGAAGTTACCCGATTTGTTCATGGAGAAGATGGTTTAAAGGAGGCTCTTAGGGCAACTGAAGCATTGAGGC CAGGATCTGAGACAAAGTTGGACTGGAAAACCATTGAGGGGATTGCTGAGGATGTTCCCTCTTGTTCTTTAGCTTATGAT GAGGTTTTGAATCAGTCACTGGTTGATCTTTCAGTTTCTTCTGGTTTATTTGACAGCAAATCTTCAGCCCGCCGGTTGTT AAAACAAGGAGGCCTTTACTTGAATAATAGCAGAGTAAACAGCGAAAATAAGAAGATTGAGGCAGCAGATATAGTGGATG GGAAAGTTCTCCTTTTATCTGCCGGAAAAAAGAATAAGGTGCTGGTGCGAATAGCATGATAGGATTTATTAGATGACCAT TCTTTGGAGACTGTTTTTTTACTCTGTGAGCTTCTTGTATGTTTAGTATAGTTTTGATTTTGGTGCCACTCATGAGTCTT AAAGTTTCCCAAGATATGTTCATTGGTAACCGGTAAGCCATTTTGTCATTGCAAGATGTTCGAATGTAACTTCCATGATA TTGATAGCCTCAAATGCTACTCAGTACTCACATATGTTAATTGCTTTCATTACTAATAAGCTATGCAACTGTCTTCTAGT TTTTTGAGTTTCTGTCATTGCAGTGCTATAGTAAATATGTAAGGTATAAAATTCTGGATTATGGAATATTGTAGTATATA AATTGCTAAAGTAAAGTTGAA
CDS sequence (LotjaGi6g1v0104800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACCAATTTTGCTTCAAGGACCATCCTCTCGTCTCATTCGACCAAGCTCTTCATCCTTCCTTTGAAACCTCCTTC TTCCCATGCTTCCTTCTCTATCCCTTTCTGTTTCACAAGAACCACCTGCACTCTACAGCCCCTACAACAACAACAGCAGC AACAACAACGTCAACATGGTCGCAGTGTCATCGGAATCCTCGAACAAAGGGGGCTACTCGAGTCCATTACCAGCGATGCT CTCAGAACCGCTTCTTCAAACGCCATTGATGCACCCCTCAAGGTCTACTGCGGATTTGACCCCACTGCCGAGAGTTTGCA CTTGGGTAACCTTCTGGGTATCATTGTTCTCTCCTGGTTCCGCCGTTGCGGCCATAATGTCGTCGCTTTGATTGGAGGTG CCACTGCACGCGTTGGCGACCCATCTGGGAAGAGCCTCGAAAGGCCCGAGCTGGATGTCGAAACGTTGGAGAGGAACACT GCTGGTATTGAAAACACCATCAGAACAATCTTGGGTCGTGCTCAAAATCTCAACTTGGAGGAGTTGAGTGTGGGTGATGG TAATTTGTGTGATTCTTCTGTTGTGGTTTTGAACAATTATGATTGGTGGAAGGAGTTTAGTTTGTTGGATTTTCTGAAAC GGGTGGGGAAATATGCTAGGGTGGGTTCAATGATGGCTAAGGAGAGTGTGAGGAAGAGGTTGGATTCTGAACAAGGGATG AGTTATACAGAGTTCACCTACCAGTTGTTGCAGGGGTATGATTTCTTGCACTTGTTTCAGAATGAGGGTGTTACTGTTCA AATTGGGGGTAGTGATCAGTGGGGCAATATAACAGCTGGGACTGAGTTAGTTAGAAAGATATTGCAGGTTGAGAGTGCTG TTTATGGCTTCACATTTCCTCTTTTATTGAAAAGTGATGGTACAAAATTTGGTAAATCTGAGGATGGTGCTATTTGGTTA TCTCCATCCTTGTTATCTCCATACAAATTTTACCAGTATTTTTTCTCTGTTCCGGATGCTGATGTGGTTAGGTTCCTGAA AATTCTTACTTTTTTGGATATTGAAGAGATTGTTAAGTTGGAGGAAGAGATGGTGAAACCTGGGTATGTGCCTAATACTG CTCAGCGGAGGCTTGCTGAAGAAGTTACCCGATTTGTTCATGGAGAAGATGGTTTAAAGGAGGCTCTTAGGGCAACTGAA GCATTGAGGCCAGGATCTGAGACAAAGTTGGACTGGAAAACCATTGAGGGGATTGCTGAGGATGTTCCCTCTTGTTCTTT AGCTTATGATGAGGTTTTGAATCAGTCACTGGTTGATCTTTCAGTTTCTTCTGGTTTATTTGACAGCAAATCTTCAGCCC GCCGGTTGTTAAAACAAGGAGGCCTTTACTTGAATAATAGCAGAGTAAACAGCGAAAATAAGAAGATTGAGGCAGCAGAT ATAGTGGATGGGAAAGTTCTCCTTTTATCTGCCGGAAAAAAGAATAAGGTGCTGGTGCGAATAGCATGA
Protein sequence (LotjaGi6g1v0104800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATNFASRTILSSHSTKLFILPLKPPSSHASFSIPFCFTRTTCTLQPLQQQQQQQQRQHGRSVIGILEQRGLLESITSDA LRTASSNAIDAPLKVYCGFDPTAESLHLGNLLGIIVLSWFRRCGHNVVALIGGATARVGDPSGKSLERPELDVETLERNT AGIENTIRTILGRAQNLNLEELSVGDGNLCDSSVVVLNNYDWWKEFSLLDFLKRVGKYARVGSMMAKESVRKRLDSEQGM SYTEFTYQLLQGYDFLHLFQNEGVTVQIGGSDQWGNITAGTELVRKILQVESAVYGFTFPLLLKSDGTKFGKSEDGAIWL SPSLLSPYKFYQYFFSVPDADVVRFLKILTFLDIEEIVKLEEEMVKPGYVPNTAQRRLAEEVTRFVHGEDGLKEALRATE ALRPGSETKLDWKTIEGIAEDVPSCSLAYDEVLNQSLVDLSVSSGLFDSKSSARRLLKQGGLYLNNSRVNSENKKIEAAD IVDGKVLLLSAGKKNKVLVRIA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| Gene3D | 37 | 301 | 265 | 3.0E-93 | ||
| PANTHER | 42 | 501 | 460 | 9.5E-190 | ||
| Hamap | 61 | 501 | 441 | 40.097 | ||
| SUPERFAMILY | 66 | 401 | 336 | 3.99E-91 | – | |
| TIGRFAM | 67 | 500 | 434 | 3.6E-109 | ||
| Pfam | 91 | 401 | 311 | 3.2E-74 | ||
| CDD | 93 | 385 | 293 | 3.23852E-110 | ||
| ProSitePatterns | 101 | 111 | 11 | - | ||
| PRINTS | 105 | 127 | 23 | 5.1E-26 | ||
| PRINTS | 239 | 254 | 16 | 5.1E-26 | ||
| PRINTS | 260 | 282 | 23 | 5.1E-26 | ||
| PRINTS | 295 | 307 | 13 | 5.1E-26 | ||
| Gene3D | 302 | 407 | 106 | 3.8E-33 | – | |
| SUPERFAMILY | 402 | 500 | 99 | 9.57E-16 | – | |
| Gene3D | 408 | 502 | 95 | 2.3E-25 | ||
| ProSiteProfiles | 435 | 501 | 67 | 12.317 | ||
| CDD | 437 | 501 | 65 | 1.03244E-6 | ||
| Pfam | 442 | 482 | 41 | 5.2E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Tyrosine-tRNA ligase activity | Catalysis of the reaction: L-tyrosine + ATP + tRNA(Tyr) = L-tyrosyl-tRNA(Tyr) + AMP + diphosphate + 2 H(+). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Tyrosyl-tRNA aminoacylation | The process of coupling tyrosine to tyrosyl-tRNA, catalyzed by tyrosyl-tRNA synthetase.The tyrosyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a tyrosine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification.T |
Expression pattern of LotjaGi6g1v0104800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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