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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0053200 |
| Transcript ID | LotjaGi3g1v0053200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tyrosine--tRNA ligase; TAIR: AT3G02660.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; Swiss-Prot: sp|Q9M876|SYYM_ARATH Tyrosine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072UXA5|A0A072UXA5_MEDTR Tyrosine--tRNA ligase; Found in the gene: LotjaGi3g1v0053200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5553763..5556123) extracted from Lotus japonicus Gifu genome v1.2.
GCAGAATTTATCTGAACCATTGGATGAATCCAACGGTCGAGGTAGCAAGAGAATAGTTACAGAAAATTGAAGGCTTAAAT ATTTAGAGGGCCCTAAACCAAAGAATCCTGAATTTAGAGGGACCAAAAACATATTAAAGCCAAAATCAAATGATCTTGAA CTCTCACACAGTCTCACACTCTCACTCCACATCCCAAAACCTCAAACTAGCATTCACCAATTCACCATGACCACCACTTT TGCTTCAAGGACCATTCTCTCTTCCCATCCAACCAAGCTCTTCATCCTTCCTTTCAAACCTCCCTCTTCCCATTTCCCTC TCCGTTTCACCAGAGCCACCTGCACTCTACATTCCCAGCAACAACAACAGCAGCGACAACAACCTCAAAATGGTCGCAGT GTCATCGGAATCCTCGAAGAACGGGGGCTTCTTGAATCCATTACCAGCGATGCTCTCAGAAGCGCTTCTTCAACTGCACC CCTCAGGGTCTACTGCGGATTCGACCCTACCGCCGAGAGCTTGCACTTGGGCAACCTTCTGGGCATCATTGTACTCTCCT GGTTCCGCCGCTGCGGCCATAATGTCGTTGCCTTGATCGGCGGCGCCACCGCTCGCGTCGGCGACCCATCTGGGAAGAGC ATCGAGAGGCCTGAGCTTGATGTTGAAACATTGGAGAGGAACACTCTGGGTATTGGAAACACCATCAGAACAATCTTGGG TCGTGCTCAAAATCTCAACTTGGAGGAGTTGAGTGTGGATGATGATGATGATGATGATGGTAACTTGTTTGATTCTTCTG TTGTGGTTTTGAACAATTATGATTGGTGGAAGGAGTTTAGTTTGTTGGATTTTTTGAAAAGGGTTGGTAAATATGCTAGG GTGGGTTCAATGATGGCTAAGGAGAGTGTGAGGAAGAGGTTGGAGTCTGAACAAGGGATGAGTTATACTGAGTTTACTTA CCAGTTGTTACAGGGCTATGATTTCTTGCACTTGTTTCAGAATGAGGGTGTTAGTGTTCAAATTGGGGGTAGTGATCAAT GGGGGAATATAACTGCTGGCACTGAGTTAGTTAGAAAGATATTGCAGGTTGAGAGTGCTGTCTATGGCTTGACATTTCCT CTTTTATTGAAAAGTGATGGCACAAAATTTGGTAAGTCTGAGGATGGTGCTATTTGGTTGTCTCCAGTCTTGTTATCTCC ATACAAGTTTTACCAGTATTTTTTCTCCGTTCCGGATGCTGATGTGGTTAGGTTCTTGAAGATTCTTACATTTTTGGATA TTGAAGAGATAGTTAAGTTGGAGGAAGAGATGGTGAAACCTGGGTATGCGCCTAATACTGCGCAGCGGAGGCTTGCAGAA GAAGTTACCCGATTTGTTCATGGAGAAGATGGTTTAAGGGAGGCTCTTAGGGCAACTGAAGCATTGAGGCCTGGATCTGA GACAAAGCTGGACTGGAAAACCATTGAGGGGATTGCTGAGGATGTACCCTCTTGTTCTTTAGCTTATGATGAGGTTTTGA ACCAATCATTGGTTGATCTTTCAGTTTCTTCTGGTTTATTTGACAGCAAATCTGCTGCGCGGCGTTTGTTAAAACAAGGA GGACTTTACTTGAATAACAGCAGAGTAAATAGTGAAAATAAGAAGATTGAGGTAGCAGATATAGTGGATGGGAAGGTTCT TCTTTTATCTGCAGGAAAAAAGAATAAGGTGCTGGTGCGAATAGCATGATAGGATTTATTAAATGAACATTCTTTGAAGA TTGTTTTATTTACTCTGTAAGTTTGTTTTATGTTTAGTTAAGCTTTGATTTTGGTGCTACACAGTACACAAGAGCTTTAA AGTTACCTGTGAAACAAGTATGTTAATTTGCAACTGGTAATATGTTCCAACATGTAACTTCCATGACATGGATGGCCTTG TATGCTACTCACATTTGTTAATTGCTTTCCTTATTAATAAACTGTGCAGCTGTCTACTAGTTTTTATAGTTTCTGTCAGT GCAGCGCAATAGTAAATATGTATGATATAAAATTCTAGATTATGGAATATCGAAGTAAATAAGTTGCTCAACCATAGTTG AGATGGATTATAAGTGCCAACAATATTGAGCATCGATTAGTGAAGTCTTAAGTTATTTGAATTTGAATGGTAATCTTGTG TTGGGGACTGGCTGGTTGATTGCTGTTGGGGCCTCTCACTGGCAATCTTAATTTGGATCTAGAATATTTGAGGTTATGCT TCATATTTAATATTGGGTGCGTTCGGGTAAATAATTAAGCGCTTAGTGCATGCGCTTATTCATAAGCTAAATTGAAAAGT TTATTGAAATAAGCTCAAAATAGATTGGTATAAGCGCTTAT
CDS sequence (LotjaGi3g1v0053200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCACCACTTTTGCTTCAAGGACCATTCTCTCTTCCCATCCAACCAAGCTCTTCATCCTTCCTTTCAAACCTCCCTC TTCCCATTTCCCTCTCCGTTTCACCAGAGCCACCTGCACTCTACATTCCCAGCAACAACAACAGCAGCGACAACAACCTC AAAATGGTCGCAGTGTCATCGGAATCCTCGAAGAACGGGGGCTTCTTGAATCCATTACCAGCGATGCTCTCAGAAGCGCT TCTTCAACTGCACCCCTCAGGGTCTACTGCGGATTCGACCCTACCGCCGAGAGCTTGCACTTGGGCAACCTTCTGGGCAT CATTGTACTCTCCTGGTTCCGCCGCTGCGGCCATAATGTCGTTGCCTTGATCGGCGGCGCCACCGCTCGCGTCGGCGACC CATCTGGGAAGAGCATCGAGAGGCCTGAGCTTGATGTTGAAACATTGGAGAGGAACACTCTGGGTATTGGAAACACCATC AGAACAATCTTGGGTCGTGCTCAAAATCTCAACTTGGAGGAGTTGAGTGTGGATGATGATGATGATGATGATGGTAACTT GTTTGATTCTTCTGTTGTGGTTTTGAACAATTATGATTGGTGGAAGGAGTTTAGTTTGTTGGATTTTTTGAAAAGGGTTG GTAAATATGCTAGGGTGGGTTCAATGATGGCTAAGGAGAGTGTGAGGAAGAGGTTGGAGTCTGAACAAGGGATGAGTTAT ACTGAGTTTACTTACCAGTTGTTACAGGGCTATGATTTCTTGCACTTGTTTCAGAATGAGGGTGTTAGTGTTCAAATTGG GGGTAGTGATCAATGGGGGAATATAACTGCTGGCACTGAGTTAGTTAGAAAGATATTGCAGGTTGAGAGTGCTGTCTATG GCTTGACATTTCCTCTTTTATTGAAAAGTGATGGCACAAAATTTGGTAAGTCTGAGGATGGTGCTATTTGGTTGTCTCCA GTCTTGTTATCTCCATACAAGTTTTACCAGTATTTTTTCTCCGTTCCGGATGCTGATGTGGTTAGGTTCTTGAAGATTCT TACATTTTTGGATATTGAAGAGATAGTTAAGTTGGAGGAAGAGATGGTGAAACCTGGGTATGCGCCTAATACTGCGCAGC GGAGGCTTGCAGAAGAAGTTACCCGATTTGTTCATGGAGAAGATGGTTTAAGGGAGGCTCTTAGGGCAACTGAAGCATTG AGGCCTGGATCTGAGACAAAGCTGGACTGGAAAACCATTGAGGGGATTGCTGAGGATGTACCCTCTTGTTCTTTAGCTTA TGATGAGGTTTTGAACCAATCATTGGTTGATCTTTCAGTTTCTTCTGGTTTATTTGACAGCAAATCTGCTGCGCGGCGTT TGTTAAAACAAGGAGGACTTTACTTGAATAACAGCAGAGTAAATAGTGAAAATAAGAAGATTGAGGTAGCAGATATAGTG GATGGGAAGGTTCTTCTTTTATCTGCAGGAAAAAAGAATAAGGTGCTGGTGCGAATAGCATGA
Protein sequence (LotjaGi3g1v0053200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTTFASRTILSSHPTKLFILPFKPPSSHFPLRFTRATCTLHSQQQQQQRQQPQNGRSVIGILEERGLLESITSDALRSA SSTAPLRVYCGFDPTAESLHLGNLLGIIVLSWFRRCGHNVVALIGGATARVGDPSGKSIERPELDVETLERNTLGIGNTI RTILGRAQNLNLEELSVDDDDDDDGNLFDSSVVVLNNYDWWKEFSLLDFLKRVGKYARVGSMMAKESVRKRLESEQGMSY TEFTYQLLQGYDFLHLFQNEGVSVQIGGSDQWGNITAGTELVRKILQVESAVYGLTFPLLLKSDGTKFGKSEDGAIWLSP VLLSPYKFYQYFFSVPDADVVRFLKILTFLDIEEIVKLEEEMVKPGYAPNTAQRRLAEEVTRFVHGEDGLREALRATEAL RPGSETKLDWKTIEGIAEDVPSCSLAYDEVLNQSLVDLSVSSGLFDSKSAARRLLKQGGLYLNNSRVNSENKKIEVADIV DGKVLLLSAGKKNKVLVRIA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 32 | 299 | 268 | 6.6E-94 | ||
| PANTHER | 37 | 499 | 463 | 3.4E-188 | ||
| Hamap | 57 | 499 | 443 | 39.875 | ||
| SUPERFAMILY | 61 | 399 | 339 | 2.86E-91 | – | |
| TIGRFAM | 63 | 498 | 436 | 1.7E-106 | ||
| Pfam | 83 | 399 | 317 | 1.1E-73 | ||
| CDD | 86 | 383 | 298 | 5.60689E-108 | ||
| ProSitePatterns | 94 | 104 | 11 | - | ||
| PRINTS | 98 | 120 | 23 | 9.1E-27 | ||
| PRINTS | 237 | 252 | 16 | 9.1E-27 | ||
| PRINTS | 258 | 280 | 23 | 9.1E-27 | ||
| PRINTS | 293 | 305 | 13 | 9.1E-27 | ||
| Gene3D | 300 | 405 | 106 | 1.5E-32 | – | |
| SUPERFAMILY | 400 | 498 | 99 | 3.4E-16 | – | |
| Gene3D | 406 | 500 | 95 | 2.7E-25 | ||
| ProSiteProfiles | 433 | 499 | 67 | 12.599 | ||
| SMART | 434 | 491 | 58 | 0.0041 | ||
| CDD | 435 | 499 | 65 | 2.81894E-7 | ||
| Pfam | 440 | 480 | 41 | 1.0E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Tyrosine-tRNA ligase activity | Catalysis of the reaction: L-tyrosine + ATP + tRNA(Tyr) = L-tyrosyl-tRNA(Tyr) + AMP + diphosphate + 2 H(+). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Tyrosyl-tRNA aminoacylation | The process of coupling tyrosine to tyrosyl-tRNA, catalyzed by tyrosyl-tRNA synthetase.The tyrosyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a tyrosine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification.T |
Expression pattern of LotjaGi3g1v0053200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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