Domain Predictions — View

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PF09111

Source: Pfam

Description

SLIDE

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003676 View details of GO:0003676 AmiGO InterPro QuickGO	Molecular function	Nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.	Subterm of GO:0097159 GO:1901363
GO:0005524 View details of GO:0005524 AmiGO InterPro QuickGO	Molecular function	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.	Subterm of GO:0008144 GO:0032559 GO:0035639
GO:0005634 View details of GO:0005634 AmiGO InterPro QuickGO	Cellular component	Nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.	Subterm of GO:0043231
GO:0006338 View details of GO:0006338 AmiGO InterPro QuickGO	Biological process	Chromatin remodeling	Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.	Subterm of GO:0006325
GO:0016818 View details of GO:0016818 AmiGO InterPro QuickGO	Molecular function	Hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Catalysis of the hydrolysis of any acid anhydride which contains phosphorus.	Subterm of GO:0016817

Associated Lotus transcripts 9

Transcript	Name	Description	Predicted domains	Domain count
Lj4g3v2371620.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromatin remodeling complex subunit [Medicago truncatula] gi\|357447407\|ref\|XP_003593979.1\|	Domains Coil G3DSA:1.10.10.60 G3DSA:3.40.50.300 IPR000330 IPR001005 IPR001650 IPR009057 IPR014001 IPR015194 IPR015195 IPR017884 IPR027417 IPR029915 PF00176 PF00271 PF09110 PF09111 PS51192 PS51194 PS51293 PTHR10799 PTHR10799:SF691 SM00487 SM00490 SM00717 SSF101224 SSF46689 SSF52540 cd00046 cd00079 cd00167 mobidb-lite	32
Lj4g3v2371620.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromatin remodeling complex subunit [Medicago truncatula] gi\|357447407\|ref\|XP_003593979.1\|	Domains Coil G3DSA:1.10.10.60 IPR001005 IPR009057 IPR015194 IPR015195 IPR017884 PF09110 PF09111 PS51293 SM00717 SSF101224 SSF46689 cd00167 mobidb-lite	15
Lj6g3v1919360.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromatin remodeling complex subunit [Medicago truncatula] gi\|357447407\|ref\|XP_003593979.1\|	Domains Coil G3DSA:1.10.10.60 G3DSA:3.40.50.300 IPR000330 IPR001005 IPR001650 IPR009057 IPR014001 IPR015194 IPR015195 IPR017884 IPR020838 IPR027417 IPR029915 PF00176 PF00271 PF09110 PF09111 PF13892 PS51192 PS51194 PS51293 PTHR10799 PTHR10799:SF691 SM00487 SM00490 SM00717 SSF101224 SSF46689 SSF52540 cd00046 cd00079 cd00167 mobidb-lite	34
LotjaGi4g1v0345700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase protein; TAIR: AT5G18620.2 chromatin remodeling factor17; Swiss-Prot: sp\|F4JY24\|CHR17_ARATH ISWI chromatin-remodeling complex ATPase CHR17; TrEMBL-Plants: tr\|A0A1J7I094\|A0A1J7I094_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0345700	Domains Coil G3DSA:1.10.10.60 G3DSA:1.10.1040.30 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001005 IPR001650 IPR009057 IPR014001 IPR015194 IPR015195 IPR017884 IPR020838 IPR027417 IPR036306 IPR038718 PF00176 PF00271 PF09110 PF09111 PF13892 PS51192 PS51194 PS51293 PTHR10799 PTHR10799:SF970 SM00487 SM00490 SM00717 SSF101224 SSF46689 SSF52540 cd00167 cd17997 cd18793 mobidb-lite	37
LotjaGi4g1v0345700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase protein; TAIR: AT5G18620.2 chromatin remodeling factor17; Swiss-Prot: sp\|F4JY24\|CHR17_ARATH ISWI chromatin-remodeling complex ATPase CHR17; TrEMBL-Plants: tr\|I1KN24\|I1KN24_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0345700	Domains Coil G3DSA:1.10.10.60 G3DSA:1.10.1040.30 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001005 IPR001650 IPR009057 IPR014001 IPR015194 IPR015195 IPR017884 IPR027417 IPR036306 IPR038718 PF00176 PF00271 PF09110 PF09111 PS51192 PS51194 PS51293 PTHR10799 PTHR10799:SF970 SM00487 SM00490 SM00717 SSF101224 SSF46689 SSF52540 cd00167 cd17997 cd18793 mobidb-lite	35
LotjaGi4g1v0345700.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase protein; TAIR: AT5G18620.2 chromatin remodeling factor17; Swiss-Prot: sp\|F4JY24\|CHR17_ARATH ISWI chromatin-remodeling complex ATPase CHR17; TrEMBL-Plants: tr\|A0A1J7I094\|A0A1J7I094_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0345700	Domains Coil G3DSA:1.10.10.60 G3DSA:1.10.1040.30 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001005 IPR001650 IPR009057 IPR014001 IPR015194 IPR015195 IPR017884 IPR027417 IPR036306 IPR038718 PF00176 PF00271 PF09110 PF09111 PS51192 PS51194 PS51293 PTHR10799 PTHR10799:SF970 SM00487 SM00490 SM00717 SSF101224 SSF46689 SSF52540 cd00167 cd17997 cd18793 mobidb-lite	35
LotjaGi4g1v0345700.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase protein; TAIR: AT5G18620.2 chromatin remodeling factor17; Swiss-Prot: sp\|F4JY24\|CHR17_ARATH ISWI chromatin-remodeling complex ATPase CHR17; TrEMBL-Plants: tr\|A0A1J7I094\|A0A1J7I094_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0345700	Domains Coil G3DSA:1.10.10.60 G3DSA:1.10.1040.30 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001005 IPR001650 IPR009057 IPR014001 IPR015194 IPR015195 IPR017884 IPR027417 IPR036306 IPR038718 PF00176 PF00271 PF09110 PF09111 PS51192 PS51194 PS51293 PTHR10799 PTHR10799:SF970 SM00487 SM00490 SM00717 SSF101224 SSF46689 SSF52540 cd00167 cd17997 cd18793 mobidb-lite	35
LotjaGi6g1v0306600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase protein; TAIR: AT3G06400.2 chromatin-remodeling protein 11; Swiss-Prot: sp\|Q8RWY3\|ISW2_ARATH ISWI chromatin-remodeling complex ATPase CHR11; TrEMBL-Plants: tr\|I1M1D0\|I1M1D0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0306600	Domains Coil G3DSA:1.10.10.60 G3DSA:1.10.1040.30 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001005 IPR001650 IPR009057 IPR014001 IPR015194 IPR015195 IPR017884 IPR020838 IPR027417 IPR036306 IPR038718 PF00176 PF00271 PF09110 PF09111 PF13892 PS51192 PS51194 PS51293 PTHR10799 PTHR10799:SF970 SM00487 SM00490 SM00717 SSF101224 SSF46689 SSF52540 cd00167 cd17997 cd18793 mobidb-lite	37
LotjaGi6g1v0306600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase protein; TAIR: AT3G06400.2 chromatin-remodeling protein 11; Swiss-Prot: sp\|Q8RWY3\|ISW2_ARATH ISWI chromatin-remodeling complex ATPase CHR11; TrEMBL-Plants: tr\|A0A0B2RF13\|A0A0B2RF13_GLYSO Putative chromatin-remodeling complex ATPase chain; Found in the gene: LotjaGi6g1v0306600	Domains Coil G3DSA:1.10.10.60 G3DSA:1.10.1040.30 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001005 IPR001650 IPR009057 IPR014001 IPR015194 IPR015195 IPR017884 IPR020838 IPR027417 IPR036306 IPR038718 PF00176 PF00271 PF09110 PF09111 PF13892 PS51192 PS51194 PS51293 PTHR10799 PTHR10799:SF970 SM00487 SM00490 SM00717 SSF101224 SSF46689 SSF52540 cd00167 cd17997 cd18793 mobidb-lite	37

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	11.11