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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2371620 |
| Transcript ID | Lj4g3v2371620.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Chromatin remodeling complex subunit [Medicago truncatula] gi|357447407|ref|XP_003593979.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 24 | 61 | 38 | – | – | |
| PANTHER | 25 | 555 | 531 | 0 | – | |
| PANTHER | 25 | 555 | 531 | 0 | ||
| SUPERFAMILY | 64 | 292 | 229 | 2.35E-59 | ||
| SMART | 73 | 265 | 193 | 1.20E-36 | ||
| Gene3D | 75 | 251 | 177 | 8.40E-27 | ||
| ProSiteProfiles | 89 | 254 | 166 | 25.121 | ||
| Pfam | 90 | 357 | 268 | 1.20E-71 | ||
| CDD | 97 | 236 | 140 | 2.39E-23 | – | |
| SUPERFAMILY | 294 | 575 | 282 | 4.75E-73 | ||
| Gene3D | 373 | 529 | 157 | 1.60E-28 | ||
| Pfam | 380 | 492 | 113 | 1.50E-19 | ||
| ProSiteProfiles | 382 | 533 | 152 | 19.925 | ||
| CDD | 392 | 500 | 109 | 1.95E-26 | – | |
| SMART | 408 | 492 | 85 | 1.50E-25 | ||
| SUPERFAMILY | 640 | 730 | 91 | 6.28E-21 | ||
| Pfam | 641 | 688 | 48 | 5.10E-07 | ||
| Coils | 678 | 698 | 21 | – | – | |
| ProSiteProfiles | 727 | 779 | 53 | 17.525 | ||
| SMART | 728 | 777 | 50 | 8.30E-08 | ||
| Gene3D | 728 | 782 | 55 | 8.90E-28 | ||
| SUPERFAMILY | 731 | 781 | 51 | 7.01E-14 | ||
| CDD | 731 | 775 | 45 | 4.11E-07 | – | |
| SUPERFAMILY | 783 | 905 | 123 | 6.33E-43 | ||
| Pfam | 785 | 895 | 111 | 2.90E-44 | ||
| Gene3D | 816 | 915 | 100 | 3.00E-41 | ||
| SMART | 830 | 891 | 62 | 44 | ||
| PANTHER | 832 | 916 | 85 | 0 | – | |
| PANTHER | 832 | 916 | 85 | 0 | ||
| Coils | 878 | 912 | 35 | – | – | |
| MobiDBLite | 899 | 952 | 54 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Chromatin remodeling | Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. | ||
| Cellular component | NURF complex | An ISWI complex that contains an ATPase subunit of the ISWI family (SNF2L in mammals), a NURF301 homolog (BPTF in humans), and additional subunits, though the composition of these additional subunits varies slightly with species. NURF is involved in regulation of transcription from TRNA polymerase II promoters. | ||
| Molecular function | Hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | Catalysis of the hydrolysis of any acid anhydride which contains phosphorus. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | Nucleosome binding | Interacting selectively and non-covalently with a nucleosome, a complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Biological process | ATP-dependent chromatin remodeling | Dynamic structural changes to eukaryotic chromatin that require energy from the hydrolysis of ATP, ranging from local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation, mediated by ATP-dependent chromatin-remodelling factors. |
Expression pattern of Lj4g3v2371620.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2371620.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.