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RQC domain
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Molecular function | 3'-5' DNA helicase activity | Catalysis of the unwinding of the DNA helix in the direction 3' to 5'. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: mediator of RNA polymerase II transcription subunit 34-like [Cicer arietinum] gi|502162030|ref|XP_004512366.1| | 29 | ||
| – | PREDICTED: Werner syndrome ATP-dependent helicase homolog [Glycine max] gi|356569961|ref|XP_003553162.1| | 35 | ||
| – | PREDICTED: ATP-dependent DNA helicase Q-like 4A-like isoform X1 [Cicer arietinum] gi|502076854|ref|XP_004485478.1| | 28 | ||
| – | ATP-dependent RNA helicase DeaD; TAIR: AT1G31360.1 RECQ helicase L2; Swiss-Prot: sp|Q9FT73|MED34_ARATH Mediator of RNA polymerase II transcription subunit 34; TrEMBL-Plants: tr|A0A151RUE2|A0A151RUE2_CAJCA ATP-dependent DNA helicase Q1; Found in the gene: LotjaGi2g1v0344800 | 30 | ||
| – | ATP-dependent RNA helicase DeaD; TAIR: AT1G31360.1 RECQ helicase L2; Swiss-Prot: sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ; TrEMBL-Plants: tr|A0A0B2QEX8|A0A0B2QEX8_GLYSO Werner syndrome ATP-dependent helicase like; Found in the gene: LotjaGi6g1v0046900 | 36 | ||
| – | ATP-dependent RNA helicase DeaD; TAIR: AT1G10930.1 DNA helicase (RECQl4A); Swiss-Prot: sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A; TrEMBL-Plants: tr|G7INR2|G7INR2_MEDTR ATP-dependent DNA helicase RecQ family protein; Found in the gene: LotjaGi6g1v0361700 | 36 | ||
| – | ATP-dependent RNA helicase DeaD; TAIR: AT1G10930.1 DNA helicase (RECQl4A); Swiss-Prot: sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A; TrEMBL-Plants: tr|G7INR2|G7INR2_MEDTR ATP-dependent DNA helicase RecQ family protein; Found in the gene: LotjaGi6g1v0361700 | 36 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 14.29 |