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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0112500 |
| Transcript ID | LotjaGi6g1v0112500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell division control 6; TAIR: AT1G07270.1 Cell division control, Cdc6; Swiss-Prot: sp|Q8W032|CDC6B_ARATH Cell division control protein 6 homolog B; TrEMBL-Plants: tr|I1KYU8|I1KYU8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0112500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:26840648..26845910) extracted from Lotus japonicus Gifu genome v1.2.
CTGCACTCAATCAATCTCCAATTTCTCATCGATGCCTTCTCTCACCACCAAGCGCAGACTCAGATCTGCCGCACCGCCGC CGTCTCCGCCCAAGCGTCACCGCCGATGCACGCCGTGTTCCGCCGCACCGTCACTAATCCAAGATGTAACCGCTGCTACG AAACCCAAGTGGAATCCTAAAGGTGATTGATTAATTGATTACTGATTTTCATTTCACTGTTTTTTTTCCTTCTTCTTTTA ATTGTGGTAATTTAGTTGAATTTAGTGTTGTTAATCGCTTGTGTGGTGTTGGGAAATGATAGATTGTGAGCAGTTGAAGA TGGTGAAGGAGGCACTGCACGTGTCCACCGCGCCGGAGACAATCGTTTGCCGTGAGGAGGAGCAGAATGTGGTTTTGGAG TTCTGTAAAGGATGCGTTGATCACCAGAAGGCTGGGAGTCTTTACATATGTGGTTGTCCTGGAACTGGCAAATCTTTATC TATGGAAAAAATCAAGGGACTTTTGCTTCAATGGGTCTCCCAGGTTTGTGAATTGTGATCTGTTCTTGTTGGTTTTTCCT CAATTTGATGAATATACCAATGTCAGTATAGATCCCTTTACTGATCATTGAAAACAATGCTGTGGATTTTGTCATGGTTG CCCAATTTATGTAATTGATGACCCTATGTAATTGGATTGTAGAAGAACACTGTAATAGTCCTTTACCTTTATTGAGTGTT TGGAATAATGGTGGATATAAGATCCTAAGCACTTAAGACCAGGCTTGTTAATAGCGCGCTATAGCGGCGCAATAGCGTTA TAATGTAGTGCCCTGGGGGTCACCGCTACTCCACTGTTTGCCGCTATTGTCCGCTATTTGCTGCTATAGCGCTCGAAATA ACGTTTTTTGGGCTTGCCGCTACACTACGCTATCCGCCATTAACAACACTTCTTAAGACTAGAAGTTTTGAGGGGGGGGG GGGGTTCAATGTTGAACCACTTCTGGGGTCAAAAAATTGGATACAGACTCATTAAAATTCTCCATCTAGACCACATTATG TTTTGTTTTTGTTCCTTCCATTAATGCAATCTCATATGCAGGCTGATTTCCCGACACTGGATGTTTTATCTGTGAATTGC ACATCTCTTGTCAACACAACTGATATTTTCACCAAGGTAGGAATATGTTGTAGCACATTGTAGTTAAGTTAGCAATAATC AGTTGACCCATGACTGACTTATCTGGTGTTCTGGCAGATACTTGGGTTAAGCAAAGCACCGGGGAAAAAGGTTTCTGGCA CACCCTTACAGCAACTTCAGCACATGTATTCTCAGAAATCATCCAGCAAGAATATGACGTAAGAAACATATTGATTATAG TCTGACTTCTATAGATGAGTTTCTTATGCTGAGTGTTTTTGTAATACGGATCTCCATGGTAACAGATTGATAATAGCTGA TGAGTTAGACTATCTTATAACTAAAGACAGAGCTGTGCTTCATGATCTTTTCATGCTTACAACATTCCCGTTTTCCAGAT GTATATTAGTAGGTAAATTTCGCGCAAAAGTATAACTATAGTTTCTGACTTTTTTATAACCCTTGACTATAAAACAATTT GGGTATTCAGAACTTAGTGTGCCTATTTATACAGGTGTTGCAAACGCAATTGATCTAGCTGATCGATTCCTACCGAGGCT TACAGCATTAAATTGTGAGTAATTTAAGTTAATAAGTTTGTATAAAGCACTTCCATTTCATTCTGATTGCTTTGAATATT GTCTCTCAATGACCTTAGTTATGAAGCCAGCCTTCTACTTGTGTACATGAATTGACATTATTTTTCTGTCTTTTTCACTT TTAATTTTTTTCTATTTGTTCTGCTCTAGGCAAGCCTGAAGTTATAACTTTCCGGGCGTACTCTAAAGATCAGATCCTTA GGATTCTTGAAGAAAGGCTAAAGGTAAGATTATTGTTATACAACTTGTTTGAGTTATAGGGTATCCCGCTTTCACCTTGT TTGATTACTTGAACAAAATTATCATTATCAAATGTCATGCTTTTTTTTATAAGTTTACTTCTTTTATGACTCAGGTGAAG ACCAAAAATAACAAAAAGTTACATTTCTCCTTTACGAATATTTTTAGTTTTTACTAATAGCTTTTTGTCTCACTATCAGG AACTTCCTTACACTGTCTTCCAACACCAAGCGCTGGAATTATGTGCTAGGGTAAGTTCATTTACAACTGTTCAGATAAGT TTGTATTTGCCTCTATCCTTAGTCTTTACCAAGGATCTATCATCAAATAAAACTGAGCTAATGATGAATTCTAGATCTTT AAGGGCATTTACTGTCCTTGATTTGGCTTAGTAGTATGTCTAATGTTACCTCTGCCAGTCCTTCCTTTTGTTAGAGACAG ATAGAATGTGATAAGCTCAGCAGCATTCCACTTTGTGTAAAAGTTGCATTCAAATGTACTGTTGACTTGTTTTGTTATTA TTTTCCCCGCAAAGTGAGTTTAGATGAACAATGAGAGCTGTAAAGTGCATTAAACTCAACAGTAGGTTTTACAGAGTTGG TTTTAATTAATACACTAATGATAAGAGCAGCATAAGAAAGGTATACAATAATTCATCTTGAAATAATATGTATGTAGAGC CTAATTGGCACTTCTCATTGCAGAAAGTTGCAGCTGCTTCTGGAGATATGCGAAATGCTCTTTGTATATGCAGGTTAGTC ATTTTTTCATTATTATTATAATTATCATTCACTTTTTATTGCCTTTTATGCTCATGAAAACGAGTCCATCCAAAATTTAT TACTATATTTGATCTGCCAATATATTAAGATTGAAAAATTGTCATGCTTAAACAACTTCACATTTTATATTCAACATTAA TGTTGCCAAAAAAAGCGTTGAATCATTCCCTACCCATAGGAAGGTGTAATGCTGGATGTTGGCATTATTTTCTGCTCATT TATCTAGTTTTCATTTTTTTTTCAATTGAAATGGATCTTCTTGCTTCCAGAACCCATCCTTAGTTTTTGTTGGGCTTATA TGTTATTACAATATGATTGACGATACAAGATTTACATTCGCCATTCAGCCAGAGTAAAGTCAGGCAAGAGAATGATTTTG TAGTTCACTTTCTTTCCAGGAGTGCAATAGAGATTCTAGAAGGGGAAATTAGAGAATCTGCCTCCAATTTGGATACCTCG TTGGAAGAGAAATCATCCACTGAACAGAATCTTGCGACAGATCCTGATTTTGTTAAAAAACAAGAATTTGACATAGTAAG TGCTCAGAAGTCTGTTCCTAGCTTGTAGACAGATGGATTTAATATTATTAAACTATTTCTCAGTTGATGACAGTTTAAGA AACATAATGAGTACAAATTTGCATTTATCATGCATCTCTTTTGATTCATTGTTGTTTGAATACATTTCTTCAAGTTTAGA TTCTTAGTTTTGAACTTAGATGGCTACTCTTAGAAGACGTTTTCATGTAGTTTACTGTTGTAGTTGCATCAGTTTTAGTA TGATTGAGTTATTACTGTCAGTCATACAAGGTATATATGTAACAAAGTTCCAGATTAATAGGATTCTGTATAATTGGTAT ATAGCATTGAGCTGTTTCTTTCAGGAGTCTTCAATATTATAAAGTCATTGTAGTTACACTTCAGCACCAGTATATGATAC TTTTAATTTACTAAACATGTAGAGTTTCTCTATTATCCACTCTCCATGCTTTAGAATCTAAAGGCCTAAAATCCTCAAAA CTAATTGCAGGTAAGGATTGATCACATGGCTCGTGCTTTGTCTAAAACATATAGATCACCGGCAGTGGATACAATACAAT CTCTGCCACATCATCAACAGGTAACCTAAACTATGAATATTCTATGTGAATTGTTGTGAGCTAAGAGCCTAAGAGACAGT CTATTACTGGAAGTCACATAGCTTTTATGCCAGATGCTATTATGGTGTTATGAAATTGACGTGGGCTAAGTTATGTGATC TACCATGGAGAAATCTCTTCTAGTCTTAATTATTATCATAAGAAATAAGTAATAGAATTTGAAACTCATCTAAGGTCGGT AAAGAAACAAGTGACAACTTCATATGATATTAAGGGTACTTAGTTATTTGAAATTTGTTTAGTAGAACAATCAAGCTAAC CCACATAAATGATCTTTGACAACACTAGACACAAATCACCTTTTTTTTTCTTGTTTAACATTGTACTGAAACTAACAAAA TCCAATACAGAAGCGTCTTTTTACTAGGTACTGCCCATTTTTTTTACAACTTTTCTGGATCTGAACTGTTTGCAGATTAT ACTCTGCTCTACTATGAAACAATTCCGTGGTGCCAAGAAAGATGCAATTCTTGGGGAGGTATGCTTTACAGCTATTTATG CGTGCAAGGGTGTGATTCACTCTAACCTATGCTTTGATACCCAATTCTAAAAGAGTAATACTTATATGATGCAGTTGTAT AAATCTTACATGGAGATATGTAAATCATCACTAATTCCACCAGCAGGAATCTTAGAATTTTCAAACATGTGCAGAGTGCT GAATGATCAGGTATCTAAGGACTAACCTCAATTTGATTATGAATTTCCAGATGTATTGCCATTTGCCACTGGATGGAATT TTTTATTCAAGCGTGCTTTATCAACAAGGGAATATTTTAATTGGTAAAATGATGAAACTTTATTGCAGGGGCTTATTAAA CTAGGACAATCCCGGGAGGATAAATTGAGAAGAGTATCACCTAAAGTAGATGAGGGTGATATTACTTTTGCGTTGCAGGT AGTCTTTCAGTTCCTTAAGACCTTGTATCATTATGGTGTTTGGATTTGTATTTCATTTTAAATGATTTCTTTGTCATACT TCAATTCCATGACACAGGGAATCCGATTTTTTCGGAACTGTCTTCAAGACTGGTGATTCTCATTCAGCTTGAAGTAACAG TAGATTCTTCCACATGTCAAGGCTGGAAGCCTCTACTTGTACATTCTTCTCCTTTTATATAGAACTCGTTTTCCGATGCA TCTTTAACTTTTCTCTATCCTTCTCACTACACATTTTTTTGCCAAAATCCTAATAGCATGTTTCCTTTCTGCATTGCAGG GCAGTTCATAACATCATATGGCTCAGACTGGTGTCTTCATTACATGAAGTGAATATACTCGATGAAACATAGAGTGGAAT CAACTTAAGCAGGATTTTCAGCTAAGAAGCAAAAGTTGTTGAAGGATATTTTTTTTTCCTGGA
CDS sequence (LotjaGi6g1v0112500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTCTCTCACCACCAAGCGCAGACTCAGATCTGCCGCACCGCCGCCGTCTCCGCCCAAGCGTCACCGCCGATGCAC GCCGTGTTCCGCCGCACCGTCACTAATCCAAGATGTAACCGCTGCTACGAAACCCAAGTGGAATCCTAAAGATTGTGAGC AGTTGAAGATGGTGAAGGAGGCACTGCACGTGTCCACCGCGCCGGAGACAATCGTTTGCCGTGAGGAGGAGCAGAATGTG GTTTTGGAGTTCTGTAAAGGATGCGTTGATCACCAGAAGGCTGGGAGTCTTTACATATGTGGTTGTCCTGGAACTGGCAA ATCTTTATCTATGGAAAAAATCAAGGGACTTTTGCTTCAATGGGTCTCCCAGGCTGATTTCCCGACACTGGATGTTTTAT CTGTGAATTGCACATCTCTTGTCAACACAACTGATATTTTCACCAAGATACTTGGGTTAAGCAAAGCACCGGGGAAAAAG GTTTCTGGCACACCCTTACAGCAACTTCAGCACATGTATTCTCAGAAATCATCCAGCAAGAATATGACATTGATAATAGC TGATGAGTTAGACTATCTTATAACTAAAGACAGAGCTGTGCTTCATGATCTTTTCATGCTTACAACATTCCCGTTTTCCA GATGTATATTAGTAGGTGTTGCAAACGCAATTGATCTAGCTGATCGATTCCTACCGAGGCTTACAGCATTAAATTGCAAG CCTGAAGTTATAACTTTCCGGGCGTACTCTAAAGATCAGATCCTTAGGATTCTTGAAGAAAGGCTAAAGGAACTTCCTTA CACTGTCTTCCAACACCAAGCGCTGGAATTATGTGCTAGGAAAGTTGCAGCTGCTTCTGGAGATATGCGAAATGCTCTTT GTATATGCAGGAGTGCAATAGAGATTCTAGAAGGGGAAATTAGAGAATCTGCCTCCAATTTGGATACCTCGTTGGAAGAG AAATCATCCACTGAACAGAATCTTGCGACAGATCCTGATTTTGTTAAAAAACAAGAATTTGACATAGTAAGGATTGATCA CATGGCTCGTGCTTTGTCTAAAACATATAGATCACCGGCAGTGGATACAATACAATCTCTGCCACATCATCAACAGATTA TACTCTGCTCTACTATGAAACAATTCCGTGGTGCCAAGAAAGATGCAATTCTTGGGGAGTTGTATAAATCTTACATGGAG ATATGTAAATCATCACTAATTCCACCAGCAGGAATCTTAGAATTTTCAAACATGTGCAGAGTGCTGAATGATCAGGGGCT TATTAAACTAGGACAATCCCGGGAGGATAAATTGAGAAGAGTATCACCTAAAGTAGATGAGGGTGATATTACTTTTGCGT TGCAGGGAATCCGATTTTTTCGGAACTGTCTTCAAGACTGGTGA
Protein sequence (LotjaGi6g1v0112500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSLTTKRRLRSAAPPPSPPKRHRRCTPCSAAPSLIQDVTAATKPKWNPKDCEQLKMVKEALHVSTAPETIVCREEEQNV VLEFCKGCVDHQKAGSLYICGCPGTGKSLSMEKIKGLLLQWVSQADFPTLDVLSVNCTSLVNTTDIFTKILGLSKAPGKK VSGTPLQQLQHMYSQKSSSKNMTLIIADELDYLITKDRAVLHDLFMLTTFPFSRCILVGVANAIDLADRFLPRLTALNCK PEVITFRAYSKDQILRILEERLKELPYTVFQHQALELCARKVAAASGDMRNALCICRSAIEILEGEIRESASNLDTSLEE KSSTEQNLATDPDFVKKQEFDIVRIDHMARALSKTYRSPAVDTIQSLPHHQQIILCSTMKQFRGAKKDAILGELYKSYME ICKSSLIPPAGILEFSNMCRVLNDQGLIKLGQSREDKLRRVSPKVDEGDITFALQGIRFFRNCLQDW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 41 | 41 | - | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PIRSF | 3 | 467 | 465 | 2.5E-139 | ||
| PANTHER | 28 | 465 | 438 | 2.2E-141 | – | |
| PANTHER | 28 | 465 | 438 | 2.2E-141 | – | |
| Gene3D | 51 | 247 | 197 | 6.5E-39 | – | |
| SUPERFAMILY | 61 | 309 | 249 | 3.65E-32 | ||
| CDD | 77 | 238 | 162 | 9.76297E-7 | – | |
| Pfam | 92 | 209 | 118 | 6.8E-17 | ||
| Pfam | 271 | 304 | 34 | 8.5E-6 | ||
| Gene3D | 360 | 446 | 87 | 7.9E-13 | ||
| SUPERFAMILY | 361 | 463 | 103 | 1.63E-16 | ||
| CDD | 368 | 450 | 83 | 5.41961E-14 | ||
| SMART | 375 | 454 | 80 | 1.6E-14 | ||
| Pfam | 375 | 453 | 79 | 4.0E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | DNA replication initiation | The process in which DNA-dependent DNA replication is started; this begins with the ATP dependent loading of an initiator complex onto the DNA, this is followed by DNA melting and helicase activity. In bacteria, the gene products that enable the helicase activity are loaded after the initial melting and in archaea and eukaryotes, the gene products that enable the helicase activity are inactive when they are loaded and subsequently activate. | ||
| Biological process | Cell division | The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells. |
Expression pattern of LotjaGi6g1v0112500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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