Domain Predictions — View

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PF15985

Source: Pfam

Description

KH domain

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003723 View details of GO:0003723 AmiGO InterPro QuickGO	Molecular function	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.	Subterm of GO:0003676

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v4407610.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: exosome complex component rrp4-like [Cicer arietinum] gi\|502115055\|ref\|XP_004495115.1\|	Domains Coil IPR004088 IPR012340 IPR026699 PF15985 PTHR21321 PTHR21321:SF4 SSF110324 SSF50249 SSF54791 cd05789 mobidb-lite	12
LotjaGi1g1v0731200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component RRP4; TAIR: AT1G03360.1 ribosomal RNA processing 4; Swiss-Prot: sp\|Q9ZVT7\|RRP4_ARATH Exosome complex component RRP4 homolog; TrEMBL-Plants: tr\|B7FL19\|B7FL19_MEDTR Ribosomal RNA processing protein; Found in the gene: LotjaGi1g1v0731200	Domains Coil G3DSA:2.40.50.100 G3DSA:2.40.50.140 IPR004088 IPR012340 IPR026699 IPR036612 PF15985 PTHR21321 PTHR21321:SF4 SSF110324 SSF50249 SSF54791 cd05789 mobidb-lite	15
LotjaGi2g1v0298600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component Rrp4; TAIR: AT2G25355.1 PNAS-3-like protein; Swiss-Prot: sp\|Q7KWX9\|EXOS3_DICDI Putative exosome complex component rrp40; TrEMBL-Plants: tr\|I1JE93\|I1JE93_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0298600	Domains G3DSA:2.40.50.100 G3DSA:2.40.50.140 G3DSA:3.30.1370.10 IPR004088 IPR012340 IPR026699 IPR036612 IPR037319 PF15985 PTHR21321 PTHR21321:SF1 SSF110324 SSF50249 SSF54791 cd05790	15
LotjaGi2g1v0298600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component Rrp4; TAIR: AT2G25355.1 PNAS-3-like protein; Swiss-Prot: sp\|Q7KWX9\|EXOS3_DICDI Putative exosome complex component rrp40; TrEMBL-Plants: tr\|I1JE93\|I1JE93_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0298600	Domains G3DSA:2.40.50.100 G3DSA:2.40.50.140 G3DSA:3.30.1370.10 IPR004088 IPR012340 IPR026699 IPR036612 IPR037319 PF15985 PTHR21321 PTHR21321:SF1 SSF110324 SSF50249 SSF54791 cd05790	15

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd05790	CDD	1	25.00