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Lj1g3v4407610.1

Overview

Field Value
Gene ID Lj1g3v4407610
Transcript ID Lj1g3v4407610.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: exosome complex component rrp4-like [Cicer arietinum] gi|502115055|ref|XP_004495115.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Coils
Coil
9 29 21 – –
PANTHER
PTHR21321:SF4
10 325 316 3.20E-137 –
PANTHER
PTHR21321
10 325 316 3.20E-137
IPR026699
SUPERFAMILY
SSF110324
44 82 39 1.28E-05 –
SUPERFAMILY
SSF50249
85 176 92 3.95E-21
IPR012340
CDD
cd05789
86 176 91 7.62E-30 –
SUPERFAMILY
SSF54791
179 322 144 5.06E-32
IPR004088
Pfam
PF15985
179 221 43 2.20E-13
IPR004088
MobiDBLite
mobidb-lite
227 252 26 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000178
Cellular component Exosome (RNase complex) A ribonuclease complex that has 3-prime to 5-prime exoribonuclease activity and possibly endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj1g3v4407610.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4407610.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.