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LotjaGi2g1v0298600.2

Overview

Field Value
Gene ID LotjaGi2g1v0298600
Transcript ID LotjaGi2g1v0298600.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Exosome complex component Rrp4; TAIR: AT2G25355.1 PNAS-3-like protein; Swiss-Prot: sp|Q7KWX9|EXOS3_DICDI Putative exosome complex component rrp40; TrEMBL-Plants: tr|I1JE93|I1JE93_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0298600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:77317080..77320792) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAAAGTAAATCCTCCACTTCCTCTTCAAACTTAATAGACCAATTGGTGGTGAGTTTTTGCTATTGTTTGTCAATGTG TACAATTATCAGCATTACTTTTTCTCTGTTAATTCAACCTTATGCCCATGTCTTTATAGTGTCCTGGAGATGTGGTTCTT GACCTCTCTTGCATGACAAACCAGACCATTAAGCTTGGAGGTGGTCTACGCCAGGTAGGTCTCTAGTTTTCCAAAATACT ACTCCTAGGATACCTTGTTTAGTTTCACATGGCGGACTCGTAGAGTCCCGCTAGCTAACAATCAATTGTGCGCGAAATAA TACTGACCATCAGATTTCATTAAAAAAATAATTAAAGGTCGTATTCTTTACGACCGTACTGTTAAACTTAATGAGACATT CAAGTTAGACTCCATAAACATCAAAATATAAATTTTCACAACTCCGTACTTAAAATTATATTCATGATGTATATAGTACA TAGCCTTGTTTCTCTCTCAAGTTATTAAATCTTATAAGCATACATATTTCTCTTATAACATATTCTCATTTGCATTGTTT TTCCAGGATTCTGATGTGATTACTGTAATGAAGGCTGGCAGGCTAAGGTTCTCCAAGCCTAATAAATACTGGGTTGAAAG CTCTCAAAAAAGGGTCAGTGTGATACTTTGGTCATCATGTATGTATTAATGTGTAAACGATTGGCAAGGCAATGCTGATT TTTGTTGTTGTTATTTGTTCAATGCCATTCTAGTTCTGTAATCTTTTCCCTTCAGTGTTATTTGAATGTACTGTAAAATT GCTCTTAATTCATGCCTTAAAATTAGCATGCGTTTCTTTTACACAGATTCCTGAAACATTTTTAGTGGAATGGGTAATAT GTTTGTGATGTACAACAAGAGGCATTATACAGGAGATGATGGGATAAAATCCGGAAATCAATAGTTTCAATATTGTTATG GCGGTTGTAAAGTGTCAACTTTTGATTGTCCATGTATGATTGTATTTGGAATTTGAAAAACAATATTTGTCATGAAACTG TTGAGAACCTCTTAACATGTTTGCTTTCGGTCTCTCCTTCATGCCCCCTCTTGTATGGGGTAAATTTTCACTGGCAGCAC AATATCAGGTTAAAGATGTTTATGCTTTCTTTCTTTTGAATTTTCACCCACAGTAGTCATACATACCAGCATACCAATAT ATGGGAGTTATATTCTTCCTCTTGAGATAAATAGCAATTTGCATTCTGCCAGAAACTATCTCTTAATGTCTATGGATTTT TTTTTCTGACAGCATTGGATTATATGTCTTTTAGGATAGCATTTGAATGTTTTGCCCCTAGGATTGCATACTTGGGATCT TTTTCCCCATATTCTGATTATGTTGTTTTGTACAGTATGTGCCCCGTCCGGAGGATTCTGTTCTTGGTATTGTTGTCGAC TCCAGATCAGATGTAAGGGGTGTTTTCTATTTTTTCTGTTCAGGATTTCTGTTCTTATTAGTTATTAGTCTTTTACTCCT GCTCTACTTGTTTACTGAATTTAATTTGGCTCTTCCATATGATGTCAATTGGGCAAGTAATTTTTGGATTTTAATTTTGA AGTTAGGGTTTTTATTTGGGATTCAGTTTTTCAGGTTGTCTTGTTAGGGTGTTTGGTTATGTTTTTGTTGAGTCTATAAA CAGGTCATCAGTGTAAACATTCGGTACCTTTCTGCATAGTTATATAATATGGTGCTTCCTTTTCCTCAAAGAGCATCTGA TACCCAAGTCAAATTAGTAGTTTGCCCTAGAGTAGTACTCTAGGCTCATTGTTCTACATTGATATTTCTTACTCTCTTGA GTCCTTAGTGTGGATTAGAAAAGAGATTATCCATGGCATGGTAGTGTTAGCTTTCCCCAAAACTGTTAGGCTTTGCCTAC ACAAACACAAGGACATGATGGTAATTCAGGGTTGTTGCATCTTAACCAATAAAAAGGTATACGTTTTTTGAGATATATGA ATGCATTTAATAGAGAATAACAAATTGAATAATTGCTAGGTTCTATATGCATTGTTACAATTTTTTATTTACTTGAAATA ATTAACATGTTTACTTAGGTTTGAGTTTCTTTCTACAATTTCATTAAAAAAATTCAATTTATTACCATGCAGAACTTTCT TGTGGACATAAAAGGACCAGCTATAGCATTTCTACCAGTGCTTGCATTTGAAGGAGGAACTAGAAGAAATATACCCAAGT TTGAGGTGTGCACAAATTATGTTTGTATGATAATTGCATAAAAATGATGTTTGGTATCTCTCATGACTCATAGCAGTAGA GAATCACTTTATCTTTTTATTTGCAGCTAATGAACCCTTCTTTGATATTTTTTTAAACTGTCAATATAAATAATTAGGTA TAGGTGAAGGGATCAGTGTTATGTAATGCACCAAGGACAAGAGGACTGAGATCAACCATTTGAAACATTAGTAACTTTGA CAAGTTATGAAGGGAAAAAAACTGAAACTAGCCATACTATATACCGTGATCTTGTTCCTGGTCTTTAAGTCACTTAACTA GTCTGCTTGAAAAGTCTTCCCTCTTGTCTAGTGACTCTAGTCTTGAACACATGTAATACCTTGTTCCCTGTCCAAATCTC TTGGATTTATTGATATAGAAGAACACATTACTTATTTATTTAAAGGACGGGACCAAGACTATGAAGCAGGGGATTGAGTT TTAAGGTAGATGTATCTGGGTTATTATTTTTGAATTTTACTGCTGTCGTCATCATTTAACAGTTAACACAACTTACTCTT CAAGGATATATTACTGTAATAAATCTTGTAAGAGATAACATGTAAAAATCATTCACATTTTCTCTTTACCCTTTTTTTAT TTGGCTGGTGTAAATTAGTAGTTAACTTGTAATTCCCCTCTTGGTGTTGAATAGTTTTGTGTCTGGCAGGTGGTTTATCT TGTTTCTGTAGGTTGGTTTTCTCTTGCCTAATGCTTCACCTTGCAGGTAGGTACTTTGATTTATGTTCGGGTTGTAAAAG CAAACCCTGGAATGAATCCTGAGCTAGCATGCACTGATGGTAAGTCTCCTGTTCTGCAGCTTCATTTTTAAGTTCCTTTT TGTTGGTTAATTTAAATTTTCTTTTTTTGGGTCTTCTTGAATTTGCCTTTAATTTTGTTTTGGTGTTTGTTTAGCCAGTG GGAAAGCAGCAGAATATGGTGCCCTAAAAGAAGGCTATATGTTTGAGTGTACAACTGGTCTCTCCAGGATGTATGGAATT TAACATTTACTGTTCATGCTTGATTTTAACAGATCTTGTCATCTTGATATGAGAATTTGTGTTTTTTGTAGGCTTCTCAG CTCACCCACATGTCCAGTACTTGATGTTTTAGGGAAGAAACTGTCTTTTGAGATAGCAGTTGGCTTAAATGGACGTGTTT GGGTATGTAGAGACCCTCTAATTCCTGTGTGCCATATCATGTGTTCTTTCTCTTGTCTCATTACAGCATATATGCTTGAC CTTTCATGTATGAGTTAGGAAACTTCCATTCTACTGATTTCACCTTTCCTTTTTTATTCGTTGGTCCATCTAGGTCAATG CTGCATCTCCTTCTTCAACGATCATTGTAGCTAATGCTATTAAAAACTCAGAGACATTGAGTGGTGTTCAGCAGAGAATA ATGGCTGAAAAGCTGCTGCAGAAGGTCCAATGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0298600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAAGTAAATCCTCCACTTCCTCTTCAAACTTAATAGACCAATTGGTGTGTCCTGGAGATGTGGTTCTTGACCTCTC TTGCATGACAAACCAGACCATTAAGCTTGGAGGTGGTCTACGCCAGGATTCTGATGTGATTACTGTAATGAAGGCTGGCA GGCTAAGGTTCTCCAAGCCTAATAAATACTGGGTTGAAAGCTCTCAAAAAAGGTATGTGCCCCGTCCGGAGGATTCTGTT CTTGGTATTGTTGTCGACTCCAGATCAGATAACTTTCTTGTGGACATAAAAGGACCAGCTATAGCATTTCTACCAGTGCT TGCATTTGAAGGAGGAACTAGAAGAAATATACCCAAGTTTGAGGTAGGTACTTTGATTTATGTTCGGGTTGTAAAAGCAA ACCCTGGAATGAATCCTGAGCTAGCATGCACTGATGCCAGTGGGAAAGCAGCAGAATATGGTGCCCTAAAAGAAGGCTAT ATGTTTGAGTGTACAACTGGTCTCTCCAGGATGCTTCTCAGCTCACCCACATGTCCAGTACTTGATGTTTTAGGGAAGAA ACTGTCTTTTGAGATAGCAGTTGGCTTAAATGGACGTGTTTGGGTCAATGCTGCATCTCCTTCTTCAACGATCATTGTAG CTAATGCTATTAAAAACTCAGAGACATTGAGTGGTGTTCAGCAGAGAATAATGGCTGAAAAGCTGCTGCAGAAGGTCCAA TGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0298600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MESKSSTSSSNLIDQLVCPGDVVLDLSCMTNQTIKLGGGLRQDSDVITVMKAGRLRFSKPNKYWVESSQKRYVPRPEDSV LGIVVDSRSDNFLVDIKGPAIAFLPVLAFEGGTRRNIPKFEVGTLIYVRVVKANPGMNPELACTDASGKAAEYGALKEGY MFECTTGLSRMLLSSPTCPVLDVLGKKLSFEIAVGLNGRVWVNAASPSSTIIVANAIKNSETLSGVQQRIMAEKLLQKVQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF110324
9 70 62 6.8E-19 –
PANTHER
PTHR21321
10 240 231 2.8E-106
IPR026699
PANTHER
PTHR21321:SF1
10 240 231 2.8E-106 –
Gene3D
G3DSA:2.40.50.100
13 73 61 1.4E-10 –
SUPERFAMILY
SSF50249
70 162 93 2.0E-20
IPR012340
CDD
cd05790
71 156 86 1.74794E-40
IPR037319
Gene3D
G3DSA:2.40.50.140
74 150 77 9.8E-25 –
Gene3D
G3DSA:3.30.1370.10
152 238 87 1.2E-28
IPR036612
SUPERFAMILY
SSF54791
158 238 81 2.53E-21
IPR036612
Pfam
PF15985
159 207 49 1.5E-15
IPR004088

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000178
Cellular component Exosome (RNase complex) A ribonuclease complex that has 3-prime to 5-prime exoribonuclease activity and possibly endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0298600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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