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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0298600 |
Transcript ID | LotjaGi2g1v0298600.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Exosome complex component Rrp4; TAIR: AT2G25355.1 PNAS-3-like protein; Swiss-Prot: sp|Q7KWX9|EXOS3_DICDI Putative exosome complex component rrp40; TrEMBL-Plants: tr|I1JE93|I1JE93_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0298600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77316205..77320980) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAACAAAAAAAAAATGACCCATCCCTGTCTTCTCTCTCACTTTCTTACTCACCTCCTTCTTCCTCTTTCACGATTTC AGTCTCAGCCGCACCGCACAACACACCTCTGTTTCAGACCTTCATCTTCTCCTTCCGTCCTTCGTCACCGACTCGTCGGT CGCCGCCGTCACGGAAAAGAGAGTATAAATGGAAAGTAAATCCTCCACTTCCTCTTCAAACTTAATAGACCAATTGGTGG TGAGTTTTTGCTATTGTTTGTCAATGTGTACAATTATCAGCATTACTTTTTCTCTGTTAATTCAACCTTATGCCCATGTC TTTATAGTGTCCTGGAGATGTGGTTCTTGACCTCTCTTGCATGACAAACCAGACCATTAAGCTTGGAGGTGGTCTACGCC AGGTAGGTCTCTAGTTTTCCAAAATACTACTCCTAGGATACCTTGTTTAGTTTCACATGGCGGACTCGTAGAGTCCCGCT AGCTAACAATCAATTGTGCGCGAAATAATACTGACCATCAGATTTCATTAAAAAAATAATTAAAGGTCGTATTCTTTACG ACCGTACTGTTAAACTTAATGAGACATTCAAGTTAGACTCCATAAACATCAAAATATAAATTTTCACAACTCCGTACTTA AAATTATATTCATGATGTATATAGTACATAGCCTTGTTTCTCTCTCAAGTTATTAAATCTTATAAGCATACATATTTCTC TTATAACATATTCTCATTTGCATTGTTTTTCCAGGATTCTGATGTGATTACTGTAATGAAGGCTGGCAGGCTAAGGTTCT CCAAGCCTAATAAATACTGGGTTGAAAGCTCTCAAAAAAGGGTCAGTGTGATACTTTGGTCATCATGTATGTATTAATGT GTAAACGATTGGCAAGGCAATGCTGATTTTTGTTGTTGTTATTTGTTCAATGCCATTCTAGTTCTGTAATCTTTTCCCTT CAGTGTTATTTGAATGTACTGTAAAATTGCTCTTAATTCATGCCTTAAAATTAGCATGCGTTTCTTTTACACAGATTCCT GAAACATTTTTAGTGGAATGGGTAATATGTTTGTGATGTACAACAAGAGGCATTATACAGGAGATGATGGGATAAAATCC GGAAATCAATAGTTTCAATATTGTTATGGCGGTTGTAAAGTGTCAACTTTTGATTGTCCATGTATGATTGTATTTGGAAT TTGAAAAACAATATTTGTCATGAAACTGTTGAGAACCTCTTAACATGTTTGCTTTCGGTCTCTCCTTCATGCCCCCTCTT GTATGGGGTAAATTTTCACTGGCAGCACAATATCAGGTTAAAGATGTTTATGCTTTCTTTCTTTTGAATTTTCACCCACA GTAGTCATACATACCAGCATACCAATATATGGGAGTTATATTCTTCCTCTTGAGATAAATAGCAATTTGCATTCTGCCAG AAACTATCTCTTAATGTCTATGGATTTTTTTTTCTGACAGCATTGGATTATATGTCTTTTAGGATAGCATTTGAATGTTT TGCCCCTAGGATTGCATACTTGGGATCTTTTTCCCCATATTCTGATTATGTTGTTTTGTACAGTATGTGCCCCGTCCGGA GGATTCTGTTCTTGGTATTGTTGTCGACTCCAGATCAGATGTAAGGGGTGTTTTCTATTTTTTCTGTTCAGGATTTCTGT TCTTATTAGTTATTAGTCTTTTACTCCTGCTCTACTTGTTTACTGAATTTAATTTGGCTCTTCCATATGATGTCAATTGG GCAAGTAATTTTTGGATTTTAATTTTGAAGTTAGGGTTTTTATTTGGGATTCAGTTTTTCAGGTTGTCTTGTTAGGGTGT TTGGTTATGTTTTTGTTGAGTCTATAAACAGGTCATCAGTGTAAACATTCGGTACCTTTCTGCATAGTTATATAATATGG TGCTTCCTTTTCCTCAAAGAGCATCTGATACCCAAGTCAAATTAGTAGTTTGCCCTAGAGTAGTACTCTAGGCTCATTGT TCTACATTGATATTTCTTACTCTCTTGAGTCCTTAGTGTGGATTAGAAAAGAGATTATCCATGGCATGGTAGTGTTAGCT TTCCCCAAAACTGTTAGGCTTTGCCTACACAAACACAAGGACATGATGGTAATTCAGGGTTGTTGCATCTTAACCAATAA AAAGGTATACGTTTTTTGAGATATATGAATGCATTTAATAGAGAATAACAAATTGAATAATTGCTAGGTTCTATATGCAT TGTTACAATTTTTTATTTACTTGAAATAATTAACATGTTTACTTAGGTTTGAGTTTCTTTCTACAATTTCATTAAAAAAA TTCAATTTATTACCATGCAGAACTTTCTTGTGGACATAAAAGGACCAGCTATAGCATTTCTACCAGTGCTTGCATTTGAA GGAGGAACTAGAAGAAATATACCCAAGTTTGAGGTGTGCACAAATTATGTTTGTATGATAATTGCATAAAAATGATGTTT GGTATCTCTCATGACTCATAGCAGTAGAGAATCACTTTATCTTTTTATTTGCAGCTAATGAACCCTTCTTTGATATTTTT TTAAACTGTCAATATAAATAATTAGGTATAGGTGAAGGGATCAGTGTTATGTAATGCACCAAGGACAAGAGGACTGAGAT CAACCATTTGAAACATTAGTAACTTTGACAAGTTATGAAGGGAAAAAAACTGAAACTAGCCATACTATATACCGTGATCT TGTTCCTGGTCTTTAAGTCACTTAACTAGTCTGCTTGAAAAGTCTTCCCTCTTGTCTAGTGACTCTAGTCTTGAACACAT GTAATACCTTGTTCCCTGTCCAAATCTCTTGGATTTATTGATATAGAAGAACACATTACTTATTTATTTAAAGGACGGGA CCAAGACTATGAAGCAGGGGATTGAGTTTTAAGGTAGATGTATCTGGGTTATTATTTTTGAATTTTACTGCTGTCGTCAT CATTTAACAGTTAACACAACTTACTCTTCAAGGATATATTACTGTAATAAATCTTGTAAGAGATAACATGTAAAAATCAT TCACATTTTCTCTTTACCCTTTTTTTATTTGGCTGGTGTAAATTAGTAGTTAACTTGTAATTCCCCTCTTGGTGTTGAAT AGTTTTGTGTCTGGCAGGTGGTTTATCTTGTTTCTGTAGGTTGGTTTTCTCTTGCCTAATGCTTCACCTTGCAGGTAGGT ACTTTGATTTATGTTCGGGTTGTAAAAGCAAACCCTGGAATGAATCCTGAGCTAGCATGCACTGATGGTAAGTCTCCTGT TCTGCAGCTTCATTTTTAAGTTCCTTTTTGTTGGTTAATTTAAATTTTCTTTTTTTGGGTCTTCTTGAATTTGCCTTTAA TTTTGTTTTGGTGTTTGTTTAGCCAGTGGGAAAGCAGCAGAATATGGTGCCCTAAAAGAAGGCTATATGTTTGAGTGTAC AACTGGTCTCTCCAGGATGTATGGAATTTAACATTTACTGTTCATGCTTGATTTTAACAGATCTTGTCATCTTGATATGA GAATTTGTGTTTTTTGTAGGCTTCTCAGCTCACCCACATGTCCAGTACTTGATGTTTTAGGGAAGAAACTGTCTTTTGAG ATAGCAGTTGGCTTAAATGGACGTGTTTGGGTATGTAGAGACCCTCTAATTCCTGTGTGCCATATCATGTGTTCTTTCTC TTGTCTCATTACAGCATATATGCTTGACCTTTCATGTATGAGTTAGGAAACTTCCATTCTACTGATTTCACCTTTCCTTT TTTATTCGTTGGTCCATCTAGGTCAATGCTGCATCTCCTTCTTCAACGATCATTGTAGCTAATGCTATTAAAAACTCAGA GACATTGAGTGGTGTTCAGCAGAGAATAATGGCTGAAAAGCTGCTGCAGAAGGTCCAATGAGCAGTAATAATACATGTAT GTTTTTAACCCTTCCTAGTTTTGATTGGCCATTATTAGTTTATAGTGCCATGTGATTTCATGAATACTTACTTTTCTTGT AAATTTCCCACAGTTCATACTTTTTAGGCTTAAATGCACTTTTTGACCCCCAAATTTACATTTTTTGCGATTGTTGACCC TGATCTTATTTTTCTACGAAACAAGACCCTCTCCAGGCAATTTGCATGCAGAAGATGACTGGTCTTTTTGCCTGGAGAGG GTCTCGGTTCGTAGAAAAATAAGATCAGGGTCAACAATCGCAAAAAATGTAAACTTGGGGGTCCAAAAGTGCATTTAAGC CTACTTTTTATGTGCTAACAAATGCCAATGATTTTGCAGGGCAAACAAACGCTTTATGAAGAAGAATTAGAAGAAGTTCC CTGTTACTTGGAGTTTAATTTTCTGGTTATATCATTCTTTGTCTCCACAAGATATTTGATAGAAATTCAACTATGATATG TTATTTTCAATGCTCATTTGTAAAAGTCATTTTTTTGCCGTATTTGTTTAATGTAAACAGCGATTATACACTACTGTTAG GGAATCTGTTCTGGCATGCTTTTACGAACTGTTTAGTGTAGGTGAAGTGATTAAGAGTTGAAACGATCATATGTTTGTCT GCAAGCATATTTGATCAGATGTGATATATTGTGCTGCCTGATTAAATTGTTTAACATAGCCGCAAGTAAATGATCCAGAC ATTAGGATTTGTTAAAGATAAAAGAACTTGCATATATTGTGAGCTGTGTTGAACATGTTGCTTGGGACTGACTCGACTGA GGCCTGTTTGGTTAACATATTTTATCCGTTTGAGCTAAAAATAAATTTGTTAATAT
CDS sequence (LotjaGi2g1v0298600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAGTAAATCCTCCACTTCCTCTTCAAACTTAATAGACCAATTGGTGTGTCCTGGAGATGTGGTTCTTGACCTCTC TTGCATGACAAACCAGACCATTAAGCTTGGAGGTGGTCTACGCCAGGATTCTGATGTGATTACTGTAATGAAGGCTGGCA GGCTAAGGTTCTCCAAGCCTAATAAATACTGGGTTGAAAGCTCTCAAAAAAGGTATGTGCCCCGTCCGGAGGATTCTGTT CTTGGTATTGTTGTCGACTCCAGATCAGATAACTTTCTTGTGGACATAAAAGGACCAGCTATAGCATTTCTACCAGTGCT TGCATTTGAAGGAGGAACTAGAAGAAATATACCCAAGTTTGAGGTAGGTACTTTGATTTATGTTCGGGTTGTAAAAGCAA ACCCTGGAATGAATCCTGAGCTAGCATGCACTGATGCCAGTGGGAAAGCAGCAGAATATGGTGCCCTAAAAGAAGGCTAT ATGTTTGAGTGTACAACTGGTCTCTCCAGGATGCTTCTCAGCTCACCCACATGTCCAGTACTTGATGTTTTAGGGAAGAA ACTGTCTTTTGAGATAGCAGTTGGCTTAAATGGACGTGTTTGGGTCAATGCTGCATCTCCTTCTTCAACGATCATTGTAG CTAATGCTATTAAAAACTCAGAGACATTGAGTGGTGTTCAGCAGAGAATAATGGCTGAAAAGCTGCTGCAGAAGGTCCAA TGA
Protein sequence (LotjaGi2g1v0298600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESKSSTSSSNLIDQLVCPGDVVLDLSCMTNQTIKLGGGLRQDSDVITVMKAGRLRFSKPNKYWVESSQKRYVPRPEDSV LGIVVDSRSDNFLVDIKGPAIAFLPVLAFEGGTRRNIPKFEVGTLIYVRVVKANPGMNPELACTDASGKAAEYGALKEGY MFECTTGLSRMLLSSPTCPVLDVLGKKLSFEIAVGLNGRVWVNAASPSSTIIVANAIKNSETLSGVQQRIMAEKLLQKVQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SUPERFAMILY | 9 | 70 | 62 | 6.8E-19 | – | |
PANTHER | 10 | 240 | 231 | 2.8E-106 | ||
PANTHER | 10 | 240 | 231 | 2.8E-106 | – | |
Gene3D | 13 | 73 | 61 | 1.4E-10 | – | |
SUPERFAMILY | 70 | 162 | 93 | 2.0E-20 | ||
CDD | 71 | 156 | 86 | 1.74794E-40 | ||
Gene3D | 74 | 150 | 77 | 9.8E-25 | – | |
Gene3D | 152 | 238 | 87 | 1.2E-28 | ||
SUPERFAMILY | 158 | 238 | 81 | 2.53E-21 | ||
Pfam | 159 | 207 | 49 | 1.5E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Exosome (RNase complex) | A ribonuclease complex that has 3-prime to 5-prime exoribonuclease activity and possibly endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured. | ||
Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi2g1v0298600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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