Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

PF16627

Source: Pfam

Description

Unstructured region between BRX_N and BRX domain

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 13

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0090719.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Lateral signaling target protein-like protein [Medicago truncatula] gi\|357493985\|ref\|XP_003617281.1\|	Domains IPR013591 PF08381 PF16627 PS51514 PTHR22870 PTHR22870:SF166 mobidb-lite	7
Lj0g3v0267459.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Lateral signaling target protein-like protein [Medicago truncatula] gi\|357493985\|ref\|XP_003617281.1\|	Domains IPR013591 PF08381 PF16627 PS51514 PTHR22870 PTHR22870:SF166 mobidb-lite	7
LotjaGi1g1v0049200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp\|Q15751\|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr\|I1M739\|I1M739_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0049200	Domains Coil G3DSA:2.130.10.30 G3DSA:2.30.29.30 G3DSA:3.30.40.10 IPR000306 IPR000408 IPR001849 IPR009091 IPR011011 IPR011993 IPR013083 IPR013591 IPR017455 IPR027988 PF00415 PF01363 PF08381 PF13713 PF16457 PF16627 PR00633 PS00626 PS50012 PS50178 PS51514 PTHR22870 PTHR22870:SF374 SM00064 SSF50729 SSF50985 SSF57903 cd00065 cd13365 mobidb-lite	34
LotjaGi1g1v0049200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp\|Q9FN03\|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr\|A0A0B2PRJ1\|A0A0B2PRJ1_GLYSO Putative E3 ubiquitin-protein ligase HERC1; Found in the gene: LotjaGi1g1v0049200	Domains Coil G3DSA:2.130.10.30 G3DSA:3.30.40.10 IPR000306 IPR000408 IPR009091 IPR011011 IPR013083 IPR013591 IPR017455 IPR027988 PF00415 PF01363 PF08381 PF13713 PF16627 PR00633 PS00626 PS50012 PS50178 PS51514 PTHR22870 PTHR22870:SF374 SM00064 SSF50985 SSF57903 cd00065 mobidb-lite	28
LotjaGi1g1v0049200.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp\|Q9FN03\|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr\|A0A0B2PRJ1\|A0A0B2PRJ1_GLYSO Putative E3 ubiquitin-protein ligase HERC1; Found in the gene: LotjaGi1g1v0049200	Domains Coil G3DSA:2.130.10.30 G3DSA:3.30.40.10 IPR000306 IPR000408 IPR009091 IPR011011 IPR013083 IPR013591 IPR017455 IPR027988 PF00415 PF01363 PF08381 PF13713 PF16627 PR00633 PS00626 PS50012 PS50178 PS51514 PTHR22870 PTHR22870:SF374 SM00064 SSF50985 SSF57903 cd00065 mobidb-lite	28
LotjaGi1g1v0049200.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp\|Q15751\|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr\|G7K368\|G7K368_MEDTR Regulator of chromosome condensation (RCC1) family protein; Found in the gene: LotjaGi1g1v0049200	Domains Coil G3DSA:2.130.10.30 G3DSA:2.30.29.30 G3DSA:3.30.40.10 IPR000306 IPR000408 IPR001849 IPR009091 IPR011011 IPR011993 IPR013083 IPR013591 IPR017455 IPR027988 PF00415 PF01363 PF08381 PF13713 PF16457 PF16627 PR00633 PS00626 PS50012 PS50178 PS51514 PTHR22870 PTHR22870:SF374 SM00064 SSF50729 SSF50985 SSF57903 cd00065 cd13365 mobidb-lite	34
LotjaGi1g1v0049200.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp\|Q9FN03\|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr\|A0A0B2PRJ1\|A0A0B2PRJ1_GLYSO Putative E3 ubiquitin-protein ligase HERC1; Found in the gene: LotjaGi1g1v0049200	Domains Coil G3DSA:2.130.10.30 G3DSA:3.30.40.10 IPR000306 IPR000408 IPR009091 IPR011011 IPR013083 IPR013591 IPR017455 IPR027988 PF00415 PF01363 PF08381 PF13713 PF16627 PR00633 PS00626 PS50012 PS50178 PS51514 PTHR22870 PTHR22870:SF374 SM00064 SSF50985 SSF57903 cd00065 mobidb-lite	28
LotjaGi6g1v0181100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp\|Q15751\|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr\|I1N146\|I1N146_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0181100	Domains Coil G3DSA:2.130.10.30 G3DSA:2.30.29.30 G3DSA:3.30.40.10 IPR000306 IPR000408 IPR001849 IPR009091 IPR011011 IPR011993 IPR013083 IPR013591 IPR017455 IPR027988 PF00415 PF01363 PF08381 PF13713 PF16457 PF16627 PR00633 PS00626 PS50012 PS50178 PS51514 PTHR22870 PTHR22870:SF374 SM00064 SSF50729 SSF50985 SSF57903 cd00065 cd13365 mobidb-lite	34
LotjaGi6g1v0181100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp\|Q15751\|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr\|I1KXU8\|I1KXU8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0181100	Domains Coil G3DSA:2.130.10.30 G3DSA:3.30.40.10 IPR000306 IPR000408 IPR009091 IPR011011 IPR013083 IPR013591 IPR017455 IPR027988 NON_CYTOPLASMIC_DOMAIN PF00415 PF01363 PF08381 PF13713 PF16627 PR00633 PS00626 PS50012 PS50178 PS51514 PTHR22870 PTHR22870:SF374 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00064 SSF50985 SSF57903 cd00065 mobidb-lite	33
LotjaGi6g1v0181100.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp\|Q15751\|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr\|I1N146\|I1N146_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0181100	Domains Coil G3DSA:2.130.10.30 G3DSA:2.30.29.30 G3DSA:3.30.40.10 IPR000306 IPR000408 IPR001849 IPR009091 IPR011011 IPR011993 IPR013083 IPR013591 IPR017455 IPR027988 NON_CYTOPLASMIC_DOMAIN PF00415 PF01363 PF08381 PF13713 PF16457 PF16627 PR00633 PS00626 PS50012 PS50178 PS51514 PTHR22870 PTHR22870:SF374 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00064 SSF50729 SSF50985 SSF57903 SignalP-noTM cd00065 cd13365 mobidb-lite	40
LotjaGi6g1v0181100.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp\|Q15751\|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr\|I1N146\|I1N146_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0181100	Domains Coil G3DSA:2.130.10.30 G3DSA:2.30.29.30 G3DSA:3.30.40.10 IPR000306 IPR000408 IPR001849 IPR009091 IPR011011 IPR011993 IPR013083 IPR013591 IPR017455 IPR027988 NON_CYTOPLASMIC_DOMAIN PF00415 PF01363 PF08381 PF13713 PF16457 PF16627 PR00633 PS00626 PS50012 PS50178 PS51514 PTHR22870 PTHR22870:SF374 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00064 SSF50729 SSF50985 SSF57903 SignalP-noTM cd00065 cd13365 mobidb-lite	40
LotjaGi6g1v0181100.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp\|Q15751\|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr\|K7MRH4\|K7MRH4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0181100	Domains Coil G3DSA:2.130.10.30 G3DSA:3.30.40.10 IPR000306 IPR000408 IPR009091 IPR011011 IPR013083 IPR013591 IPR017455 IPR027988 NON_CYTOPLASMIC_DOMAIN PF00415 PF01363 PF08381 PF13713 PF16627 PR00633 PS00626 PS50012 PS50178 PS51514 PTHR22870 PTHR22870:SF374 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00064 SSF50729 SSF50985 SSF57903 SignalP-noTM cd00065 cd13365 mobidb-lite	36
LotjaGi6g1v0181100.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; TAIR: AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein; Swiss-Prot: sp\|Q15751\|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1; TrEMBL-Plants: tr\|I1N146\|I1N146_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0181100	Domains Coil G3DSA:2.130.10.30 G3DSA:2.30.29.30 G3DSA:3.30.40.10 IPR000306 IPR000408 IPR001849 IPR009091 IPR011011 IPR011993 IPR013083 IPR013591 IPR017455 IPR027988 NON_CYTOPLASMIC_DOMAIN PF00415 PF01363 PF08381 PF13713 PF16457 PF16627 PR00633 PS00626 PS50012 PS50178 PS51514 PTHR22870 PTHR22870:SF374 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00064 SSF50729 SSF50985 SSF57903 SignalP-noTM cd00065 cd13365 mobidb-lite	40

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	7.69