Domain Predictions — View

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TIGR00483

Source: TIGRFAM

Description

EF-1_alpha: translation elongation factor EF-1, subunit alpha

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003746 View details of GO:0003746 AmiGO InterPro QuickGO	Molecular function	Translation elongation factor activity	Functions in chain elongation during polypeptide synthesis at the ribosome.	Subterm of GO:0008135
GO:0005525 View details of GO:0005525 AmiGO InterPro QuickGO	Molecular function	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.	Subterm of GO:0032550 GO:0032561 GO:0035639
GO:0006414 View details of GO:0006414 AmiGO InterPro QuickGO	Biological process	Translational elongation	The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.	Subterm of GO:0034645 Part of GO:0006412

Associated Lotus transcripts 16

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v3690420.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: elongation factor 1-alpha-like isoform 1 [Glycine max] gi\|356558807\|ref\|XP_003547694.1\|	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004539 IPR009000 IPR009001 IPR027417 IPR031157 MF_00118_A PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR23115 PTHR23115:SF157 SSF50447 SSF50465 SSF52540 TIGR00483 cd01883 cd03693 cd03705	26
Lj2g3v0237250.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: elongation factor 1-alpha-like [Cicer arietinum] gi\|502091438\|ref\|XP_004489551.1\|	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004539 IPR009000 IPR009001 IPR027417 IPR031157 MF_00118_A PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR23115 PTHR23115:SF157 SSF50447 SSF50465 SSF52540 TIGR00483 cd01883 cd03693 cd03705	26
Lj5g3v1699430.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: elongation factor 1-alpha-like isoform 1 [Glycine max] gi\|356558807\|ref\|XP_003547694.1\|	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004539 IPR009000 IPR009001 IPR027417 IPR031157 MF_00118_A PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR23115 PTHR23115:SF157 SSF50447 SSF50465 SSF52540 TIGR00483 cd01883 cd03693 cd03705	26
LotjaGi1g1v0614400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp\|O24534\|EF1A_VICFA Elongation factor 1-alpha; TrEMBL-Plants: tr\|A0A0R0FM97\|A0A0R0FM97_SOYBN Elongation factor 1-alpha; Found in the gene: LotjaGi1g1v0614400	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004539 IPR009000 IPR009001 IPR027417 IPR031157 MF_00118_A PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR23115 PTHR23115:SF257 SSF50447 SSF50465 SSF52540 TIGR00483 cd01883 cd03693 cd03705	26
LotjaGi1g1v0614400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp\|O24534\|EF1A_VICFA Elongation factor 1-alpha; TrEMBL-Plants: tr\|A0A0R0FM97\|A0A0R0FM97_SOYBN Elongation factor 1-alpha; Found in the gene: LotjaGi1g1v0614400	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004539 IPR009000 IPR009001 IPR027417 IPR031157 MF_00118_A PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR23115 PTHR23115:SF257 SSF50447 SSF50465 SSF52540 TIGR00483 cd01883 cd03693 cd03705	26
LotjaGi1g1v0614400.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp\|O24534\|EF1A_VICFA Elongation factor 1-alpha; TrEMBL-Plants: tr\|A0A0R0FM97\|A0A0R0FM97_SOYBN Elongation factor 1-alpha; Found in the gene: LotjaGi1g1v0614400	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004539 IPR009000 IPR009001 IPR027417 IPR031157 MF_00118_A PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR23115 PTHR23115:SF257 SSF50447 SSF50465 SSF52540 TIGR00483 cd01883 cd03693 cd03705	26
LotjaGi2g1v0077000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp\|O49169\|EF1A_MANES Elongation factor 1-alpha; TrEMBL-Plants: tr\|B9SPV9\|B9SPV9_RICCO Elongation factor 1-alpha; Found in the gene: LotjaGi2g1v0077000	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004539 IPR009000 IPR009001 IPR027417 IPR031157 MF_00118_A PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR23115 PTHR23115:SF253 PTHR23115:SF257 SSF50447 SSF50465 SSF52540 TIGR00483 cd01883 cd03693 cd03705	27
LotjaGi2g1v0077000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp\|O49169\|EF1A_MANES Elongation factor 1-alpha; TrEMBL-Plants: tr\|B9SPV9\|B9SPV9_RICCO Elongation factor 1-alpha; Found in the gene: LotjaGi2g1v0077000	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004539 IPR009000 IPR009001 IPR027417 IPR031157 MF_00118_A PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR23115 PTHR23115:SF253 PTHR23115:SF257 SSF50447 SSF50465 SSF52540 TIGR00483 cd01883 cd03693 cd03705	27
LotjaGi2g1v0077000.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp\|O49169\|EF1A_MANES Elongation factor 1-alpha; TrEMBL-Plants: tr\|A0A1J7H1G7\|A0A1J7H1G7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0077000	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004539 IPR009000 IPR027417 IPR031157 PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR23115 PTHR23115:SF253 SSF50447 SSF52540 TIGR00483 cd01883 cd03693 cd03705	23
LotjaGi2g1v0077000.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp\|O49169\|EF1A_MANES Elongation factor 1-alpha; TrEMBL-Plants: tr\|B9SPV9\|B9SPV9_RICCO Elongation factor 1-alpha; Found in the gene: LotjaGi2g1v0077000	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004539 IPR009000 IPR009001 IPR027417 IPR031157 MF_00118_A PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR23115 PTHR23115:SF253 SSF50447 SSF50465 SSF52540 TIGR00483 cd01883 cd03693 cd03705	26
LotjaGi2g1v0101200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp\|O64937\|EF1A_ORYSJ Elongation factor 1-alpha; TrEMBL-Plants: tr\|A0A1J7HKW6\|A0A1J7HKW6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0101200	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004539 IPR009000 IPR009001 IPR027417 IPR031157 MF_00118_A PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR23115 PTHR23115:SF257 SSF50447 SSF50465 SSF52540 TIGR00483 cd01883 cd03693 cd03705	26
LotjaGi2g1v0101200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp\|O64937\|EF1A_ORYSJ Elongation factor 1-alpha; TrEMBL-Plants: tr\|A0A1J7HKW6\|A0A1J7HKW6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0101200	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004539 IPR009000 IPR009001 IPR027417 IPR031157 MF_00118_A PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR23115 PTHR23115:SF257 SSF50447 SSF50465 SSF52540 TIGR00483 cd01883 cd03693 cd03705	26
LotjaGi5g1v0263900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp\|P43643\|EF1A_TOBAC Elongation factor 1-alpha; TrEMBL-Plants: tr\|A0A0L9VMG2\|A0A0L9VMG2_PHAAN Elongation factor 1-alpha; Found in the gene: LotjaGi5g1v0263900	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004539 IPR009000 IPR009001 IPR027417 IPR031157 MF_00118_A PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR23115 PTHR23115:SF253 SSF50447 SSF50465 SSF52540 TIGR00483 cd01883 cd03693 cd03705	26
LotjaGi5g1v0263900.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp\|P43643\|EF1A_TOBAC Elongation factor 1-alpha; TrEMBL-Plants: tr\|A0A0R0FM97\|A0A0R0FM97_SOYBN Elongation factor 1-alpha; Found in the gene: LotjaGi5g1v0263900	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004539 IPR009000 IPR027417 IPR031157 PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR23115 PTHR23115:SF253 SSF50447 SSF52540 TIGR00483 cd01883 cd03693 cd03705	23
LotjaGi5g1v0277100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp\|O64937\|EF1A_ORYSJ Elongation factor 1-alpha; TrEMBL-Plants: tr\|A0A1J7I5T3\|A0A1J7I5T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0277100	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004539 IPR009000 IPR009001 IPR027417 IPR031157 MF_00118_A PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR23115 PTHR23115:SF253 SSF50447 SSF50465 SSF52540 TIGR00483 cd01883 cd03693 cd03705	26
LotjaGi5g1v0277100.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp\|O64937\|EF1A_ORYSJ Elongation factor 1-alpha; TrEMBL-Plants: tr\|A0A1J7I5T3\|A0A1J7I5T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0277100	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.300 IPR000795 IPR004160 IPR004161 IPR004539 IPR009000 IPR009001 IPR027417 IPR031157 MF_00118_A PF00009 PF03143 PF03144 PR00315 PS00301 PS51722 PTHR23115 PTHR23115:SF253 SSF50447 SSF50465 SSF52540 TIGR00483 cd01883 cd03693 cd03705	26

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd03705	CDD	1	6.25