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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0614400 |
| Transcript ID | LotjaGi1g1v0614400.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O24534|EF1A_VICFA Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A0R0FM97|A0A0R0FM97_SOYBN Elongation factor 1-alpha; Found in the gene: LotjaGi1g1v0614400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116026564..116028002) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTAAAGAGAAGTTTCACATTAACATCGTGGTCATTGGTCATGTCGACTCTGGGAAGTCGACTACCACTGGCCACTT GATTTACAAGCTTGGAGGTATTGACAAGCGTGTTATTGAGAGGTTTGAGAAAGAAGCTGCTGAAATGAACAAGAGGTCAT TCAAGTATGCTTGGGTGCTTGACAAGCTCAAGGCTGAGCGTGAAAGAGGGATTACCATTGATATTGCATTGTGGAAGTTT GAGACCACCAAATACTACTGCACAGTCATTGATGCTCCTGGACATCGTGACTTTATCAAGAACATGATTACTGGAACTTC TCAGGCTGACTGTGCTGTCCTTATCATTGATTCCACAACTGGTGGTTTCGAAGCTGGTATTTCCAAGGATGGACAGACTC GTGAGCACGCACTGCTTGCTTTCACTCTTGGAGTCAAGCAAATGATCTGTTGCTGTAACAAGGTACTATTTTGGCCCTTT ATTTGTTATATATGTCTTGCTGCTTATTTGAGTATTTATGTTTCTGTTTTCTGATAAGTTTAAATAATTGTCAACAGATG GATGCCACTACCCCCAAGTACTCCAAGGGTAGGTATGAAGAAATTGTGAAGGAAGTTTCTTCCTACCTGAAGAAGGTTGG TTACAACCCAGACAAAATTCCATTTGTTCCCATCTCTGGTTTTGAGGGTGACAACATGATTGAGAGGTCCACTAACCTTG ACTGGTACAAGGGCCCAACTCTTCTTGAGGCTCTTGACCAGATCAATGAGCCCAAGAGACCCTCAGACAAGCCTTTGAGG CTTCCCCTTCAGGATGTCTACAAGATTGGTGGTATTGGAACTGTGCCTGTTGGACGTGTTGAAACTGGTGTCTTGAAGCC TGGTTTTGTGGTGACTTTTGCTCCAACTGGTCTGACAACTGAAGTTAAGTCAGTGGAGATGCACCATGAGTCCCTCACTG AGGCCCTACCTGGTGACAATGTGGGATTTAATGTGAAGAATGTTGCAGTCAAGGATCTCAAGCGTGGTTTCGTGGCTTCA AACTCAAAGGATGACCCTGCCAAGGAAGCTGCAAACTTCACCTCCCAAGTCATTATCATGAACCATCCTGGCCAGATTGG AAATGGCTATGCTCCAGTGCTTGACTGCCACACTTCTCATATTGCTGTCAAATTTGCCGAGCTTTTGACCAAGATTGACA GGCGATCTGGTAAGGAGATTGAGAAGGAGCCCAAATTCTTGAAAAATGGAGATGCAGGTATGGTTAAGATGGTTCCCACC AAGCCCATGGTGGTCGAGACTTTCTCCGAGTATCCTCCTCTTGGTCGTTTTGCTGTCAGGGACATGCGTCAAACGGTTGC TGTGGGAGTCATCAAGAGTGTGGAGAAGAAGGACCCAACTGGCGCCAAGGTCACCAAGGCTGCACAGAAAAAGAAGTAA
CDS sequence (LotjaGi1g1v0614400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAAAGAGAAGTTTCACATTAACATCGTGGTCATTGGTCATGTCGACTCTGGGAAGTCGACTACCACTGGCCACTT GATTTACAAGCTTGGAGGTATTGACAAGCGTGTTATTGAGAGGTTTGAGAAAGAAGCTGCTGAAATGAACAAGAGGTCAT TCAAGTATGCTTGGGTGCTTGACAAGCTCAAGGCTGAGCGTGAAAGAGGGATTACCATTGATATTGCATTGTGGAAGTTT GAGACCACCAAATACTACTGCACAGTCATTGATGCTCCTGGACATCGTGACTTTATCAAGAACATGATTACTGGAACTTC TCAGGCTGACTGTGCTGTCCTTATCATTGATTCCACAACTGGTGGTTTCGAAGCTGGTATTTCCAAGGATGGACAGACTC GTGAGCACGCACTGCTTGCTTTCACTCTTGGAGTCAAGCAAATGATCTGTTGCTGTAACAAGATGGATGCCACTACCCCC AAGTACTCCAAGGGTAGGTATGAAGAAATTGTGAAGGAAGTTTCTTCCTACCTGAAGAAGGTTGGTTACAACCCAGACAA AATTCCATTTGTTCCCATCTCTGGTTTTGAGGGTGACAACATGATTGAGAGGTCCACTAACCTTGACTGGTACAAGGGCC CAACTCTTCTTGAGGCTCTTGACCAGATCAATGAGCCCAAGAGACCCTCAGACAAGCCTTTGAGGCTTCCCCTTCAGGAT GTCTACAAGATTGGTGGTATTGGAACTGTGCCTGTTGGACGTGTTGAAACTGGTGTCTTGAAGCCTGGTTTTGTGGTGAC TTTTGCTCCAACTGGTCTGACAACTGAAGTTAAGTCAGTGGAGATGCACCATGAGTCCCTCACTGAGGCCCTACCTGGTG ACAATGTGGGATTTAATGTGAAGAATGTTGCAGTCAAGGATCTCAAGCGTGGTTTCGTGGCTTCAAACTCAAAGGATGAC CCTGCCAAGGAAGCTGCAAACTTCACCTCCCAAGTCATTATCATGAACCATCCTGGCCAGATTGGAAATGGCTATGCTCC AGTGCTTGACTGCCACACTTCTCATATTGCTGTCAAATTTGCCGAGCTTTTGACCAAGATTGACAGGCGATCTGGTAAGG AGATTGAGAAGGAGCCCAAATTCTTGAAAAATGGAGATGCAGGTATGGTTAAGATGGTTCCCACCAAGCCCATGGTGGTC GAGACTTTCTCCGAGTATCCTCCTCTTGGTCGTTTTGCTGTCAGGGACATGCGTCAAACGGTTGCTGTGGGAGTCATCAA GAGTGTGGAGAAGAAGGACCCAACTGGCGCCAAGGTCACCAAGGCTGCACAGAAAAAGAAGTAA
Protein sequence (LotjaGi1g1v0614400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP KYSKGRYEEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQD VYKIGGIGTVPVGRVETGVLKPGFVVTFAPTGLTTEVKSVEMHHESLTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDD PAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKEIEKEPKFLKNGDAGMVKMVPTKPMVV ETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAAQKKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 446 | 446 | 0.0 | – | |
| TIGRFAM | 1 | 433 | 433 | 5.2E-215 | ||
| Gene3D | 1 | 228 | 228 | 5.9E-89 | – | |
| PANTHER | 1 | 446 | 446 | 0.0 | – | |
| Hamap | 2 | 432 | 431 | 51.42 | ||
| SUPERFAMILY | 3 | 249 | 247 | 7.46E-80 | ||
| ProSiteProfiles | 5 | 230 | 226 | 59.88 | ||
| Pfam | 7 | 222 | 216 | 4.7E-53 | ||
| PRINTS | 9 | 22 | 14 | 1.4E-23 | ||
| CDD | 9 | 227 | 219 | 1.15599E-156 | – | |
| ProSitePatterns | 61 | 76 | 16 | - | ||
| PRINTS | 68 | 76 | 9 | 1.4E-23 | ||
| PRINTS | 88 | 98 | 11 | 1.4E-23 | ||
| PRINTS | 104 | 115 | 12 | 1.4E-23 | ||
| PRINTS | 148 | 157 | 10 | 1.4E-23 | ||
| SUPERFAMILY | 226 | 321 | 96 | 5.3E-28 | ||
| Gene3D | 229 | 320 | 92 | 5.8E-41 | – | |
| CDD | 230 | 320 | 91 | 2.12691E-58 | – | |
| Pfam | 248 | 313 | 66 | 3.1E-13 | ||
| Pfam | 322 | 429 | 108 | 1.5E-39 | ||
| CDD | 323 | 426 | 104 | 3.58914E-69 | – | |
| Gene3D | 323 | 430 | 108 | 3.7E-50 | – | |
| SUPERFAMILY | 326 | 429 | 104 | 2.23E-41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation elongation factor activity | Functions in chain elongation during polypeptide synthesis at the ribosome. | ||
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Translational elongation | The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. |
Expression pattern of LotjaGi1g1v0614400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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