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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0263900 |
| Transcript ID | LotjaGi5g1v0263900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|P43643|EF1A_TOBAC Elongation factor 1-alpha; TrEMBL-Plants: tr|A0A0R0FM97|A0A0R0FM97_SOYBN Elongation factor 1-alpha; Found in the gene: LotjaGi5g1v0263900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:57367994..57369349) extracted from Lotus japonicus Gifu genome v1.2.
TCAGGCAGAGAGATGGGTAAGGAAAAGTTTCACATTAACATTGTGGTGATTGGCCATGTCGACTCTGGCAAGTCGACGAC CACCGGCCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTAATCGAGAGGTTTGAGAAAGAAGCTGCTGAGATGA ACAAGAGGTCATTCAAGTACGCTTGGGTGCTTGACAAGCTCAAGGCTGAGCGTGAAAGAGGAATCACCATTGATATTGCA CTGTGGAAGTTCGAGACGACCAAGTACTACTGCACAGTCATTGATGCCCCTGGACACAGGGATTTCATCAAGAACATGAT TACTGGAACATCCCAAGCTGATTGTGCTGTCCTTATCATTGATTCCACTACTGGCGGTTTCGAAGCTGGTATCTCCAAGG ATGGACAGACTCGTGAGCATGCTCTCCTTGCTTTCACTCTTGGTGTGAGGCAGATGATTTGCTGCTGTAACAAGATGGAC GCCACCACTCCCAAGTACTCGAAGGCTAGGTACGATGAAATCGTGAAGGAAGTCTCTTCCTACTTAAAGAAGGTTGGGTA CAACCCAGACAAGATTCCTTTTGTTCCTATCTCCGGTTTTGAGGGAGACAATATGATTGAGAGGTCTACAAGCCTTGACT GGTACAAAGGTCCAACCCTTCTTGAGGCTCTTGACCAGATCAATGAGCCAAAGAGGCCATCAGACAAGCCCCTCCGATTA CCCCTTCAGGATGTCTACATGATTGGAGGAATTGGAACTGTGCCCGTGGGGCGAGTTGAGACGGGTTCCATTAAACCTGG AATGGTGGTGACTTTTGCCCCAACTGGGCTCACAACTGAAGTTAAGTCTGTGGAGATGCACCATGAAGCTCTCCAAGAGG CCCTTCCCGGTGACAATGTGGGATTCAATGTTAAGAATGTTGCAGTCAAGGATCTCAAGCGTGGGTTTGTTGCTTCAAAC TCCAAGGATGATCCTGCCAAGGAGGCTGCTAACTTCACCTCCCAGGTTATCATCATGAACCACCCTGGCCAGATTGGCAA TGGCTATGCCCCTGTTCTTGATTGCCACACCTCCCACATTGCGGTCAAGTTTGCGCAACTTCTGACCAAGATTGATAGAC GATCCGGAAAGGAGCTTGAGAAGGACCCCAAATTCTTGAAGAATGGTGATTCTGGTTTGGTTAAGATGATTCCTACCAAG CCCATGGTGGTTGAAACTTTCTCCGAGTATCCTCCACTTGGTCGTTTTGCTGTCAGGGACATGCGTCAAACCGTGGCTGT GGGAGTCATCAAGAGCGTGGAGAAGAAGGATCCTACTGGAGCCAAGGTCACCAAGGCTGCCCAGAAGAAGAAGTGA
CDS sequence (LotjaGi5g1v0263900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAAGGAAAAGTTTCACATTAACATTGTGGTGATTGGCCATGTCGACTCTGGCAAGTCGACGACCACCGGCCACTT GATCTACAAGCTTGGAGGTATTGACAAGCGTGTAATCGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGAGGTCAT TCAAGTACGCTTGGGTGCTTGACAAGCTCAAGGCTGAGCGTGAAAGAGGAATCACCATTGATATTGCACTGTGGAAGTTC GAGACGACCAAGTACTACTGCACAGTCATTGATGCCCCTGGACACAGGGATTTCATCAAGAACATGATTACTGGAACATC CCAAGCTGATTGTGCTGTCCTTATCATTGATTCCACTACTGGCGGTTTCGAAGCTGGTATCTCCAAGGATGGACAGACTC GTGAGCATGCTCTCCTTGCTTTCACTCTTGGTGTGAGGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACTCCC AAGTACTCGAAGGCTAGGTACGATGAAATCGTGAAGGAAGTCTCTTCCTACTTAAAGAAGGTTGGGTACAACCCAGACAA GATTCCTTTTGTTCCTATCTCCGGTTTTGAGGGAGACAATATGATTGAGAGGTCTACAAGCCTTGACTGGTACAAAGGTC CAACCCTTCTTGAGGCTCTTGACCAGATCAATGAGCCAAAGAGGCCATCAGACAAGCCCCTCCGATTACCCCTTCAGGAT GTCTACATGATTGGAGGAATTGGAACTGTGCCCGTGGGGCGAGTTGAGACGGGTTCCATTAAACCTGGAATGGTGGTGAC TTTTGCCCCAACTGGGCTCACAACTGAAGTTAAGTCTGTGGAGATGCACCATGAAGCTCTCCAAGAGGCCCTTCCCGGTG ACAATGTGGGATTCAATGTTAAGAATGTTGCAGTCAAGGATCTCAAGCGTGGGTTTGTTGCTTCAAACTCCAAGGATGAT CCTGCCAAGGAGGCTGCTAACTTCACCTCCCAGGTTATCATCATGAACCACCCTGGCCAGATTGGCAATGGCTATGCCCC TGTTCTTGATTGCCACACCTCCCACATTGCGAATGGTGATTCTGGTTTGGTTAAGATGATTCCTACCAAGCCCATGGTGG TTGAAACTTTCTCCGAGTATCCTCCACTTGGTCGTTTTGCTGTCAGGGACATGCGTCAAACCGTGGCTGTGGGAGTCATC AAGAGCGTGGAGAAGAAGGATCCTACTGGAGCCAAGGTCACCAAGGCTGCCCAGAAGAAGAAGTGA
Protein sequence (LotjaGi5g1v0263900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTP KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTSLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQD VYMIGGIGTVPVGRVETGSIKPGMVVTFAPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDD PAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIANGDSGLVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVI KSVEKKDPTGAKVTKAAQKKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 357 | 357 | 5.8E-288 | – | |
| PANTHER | 1 | 357 | 357 | 5.8E-288 | – | |
| TIGRFAM | 1 | 357 | 357 | 8.7E-176 | ||
| Gene3D | 1 | 228 | 228 | 5.4E-89 | – | |
| SUPERFAMILY | 3 | 249 | 247 | 9.4E-80 | ||
| ProSiteProfiles | 5 | 230 | 226 | 59.578 | ||
| Pfam | 7 | 222 | 216 | 2.0E-53 | ||
| PRINTS | 9 | 22 | 14 | 1.1E-23 | ||
| CDD | 9 | 227 | 219 | 3.34747E-157 | – | |
| ProSitePatterns | 61 | 76 | 16 | - | ||
| PRINTS | 68 | 76 | 9 | 1.1E-23 | ||
| PRINTS | 88 | 98 | 11 | 1.1E-23 | ||
| PRINTS | 104 | 115 | 12 | 1.1E-23 | ||
| PRINTS | 148 | 157 | 10 | 1.1E-23 | ||
| Gene3D | 229 | 320 | 92 | 6.3E-41 | – | |
| CDD | 230 | 320 | 91 | 1.13207E-58 | – | |
| SUPERFAMILY | 231 | 357 | 127 | 2.33E-31 | ||
| Pfam | 248 | 313 | 66 | 1.8E-14 | ||
| Pfam | 322 | 357 | 36 | 1.5E-7 | ||
| CDD | 323 | 400 | 78 | 4.34593E-46 | – | |
| Gene3D | 323 | 356 | 34 | 1.6E-9 | – | |
| Pfam | 356 | 403 | 48 | 2.4E-15 | ||
| Gene3D | 357 | 404 | 48 | 4.6E-19 | – | |
| PANTHER | 357 | 420 | 64 | 5.8E-288 | – | |
| PANTHER | 357 | 420 | 64 | 5.8E-288 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation elongation factor activity | Functions in chain elongation during polypeptide synthesis at the ribosome. | ||
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Translational elongation | The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. |
Expression pattern of LotjaGi5g1v0263900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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