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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0077000 |
| Transcript ID | LotjaGi2g1v0077000.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|O49169|EF1A_MANES Elongation factor 1-alpha; TrEMBL-Plants: tr|B9SPV9|B9SPV9_RICCO Elongation factor 1-alpha; Found in the gene: LotjaGi2g1v0077000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:20703505..20705129) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTAAGGAGAAGTTTCACATCAACATTGTTGTCATTGGACATGTCGACTCTGGGAAGTCAACTACCACTGGTCACTT GATCTACAAGCTTGGAGGTATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCAT TCAAGTATGCCTGGGTGCTTGACAAGCTCAAGGCGGAGCGTGAGAGAGGGATTACCATTGATATTGCTTTGTGGAAATTC GAAACCAACAAGTACTACTGCACAGTCATTGATGCACCTGGACATCGTGATTTCATCAAGAACATGATCACAGGAACATC CCAGGCCGACTGTGCCGTTCTTATTATTGATTCCACAACTGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGACAGACTC GTGAGCACGCTCTCCTTGCATTCACTCTAGGAGTCAAACAGATGATCTGTTGCTGTAATAAGGTATTAACCAAAGTTTTC CTTTCCTAAATTGATTTGAACTGTATTTTATCATTTTTCAAGGCAAGTAGCTGATTTTGGCTTTTGGTTACAATCTTTGC CATAGATGGATGCCACTACCCCCAAGTATTCCAAGGCTAGGTATGATGAAATTGTGAAGGAAGTCTCTTCCTACTTGAAG AAGGTTGGTTACAACCCGGACAAGATTCCCTTTGTTCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCCAC CAACCTTGACTGGTACAAGGGTCCAACTCTTCTTGAGGCTCTTGACCAGATCAACGAGCCAAAGAGACCCACAGACAAGC CTCTAAGGCTTCCATTGCAGGATGTCTACAAGATTGGTGGTATTGGTACTGTGCCTGTTGGACGTGTTGAGACCGGTGTC TTGAAACCTGGTGTGTTGGTGACTTTTGGCCCCACTGGACTGACAACTGAAGTCAAGTCCGTGGAGATGCACCATGAGGC TTTGCAAGAGGCCCTTCCAGGTGACAATGTGGGATTCAATGTGAAGAATGTTGCAGTCAAGGATCTCAAGCGTGGTTTCG TCGCCTCCAACTCTAAGGATGACCCTGCCAAGGAAGCTGCTAACTTCACATCCCAAGTCATCATCATGAACCATCCCGGC CAGATTGGAAACGGATATGCACCGGTGCTCGACTGCCACACATCTCACATTGCTGTGAAGTTTTCTGAGATCCTGACCAA GATTGACAGACGATCTGGCAAGGAGATTGAGAAAGAGCCTAAATTTTTGAAGAATGGTGATGCAGGTTTTGTTAAGATGA TTCCTACCAAGCCCATGGTGGTTGAAACTTTCTCTGAGTATCCTCCCCTTGGTCGTTTTGCTGTGAGGGACATGCGACAA ACGGTGGCCGTGGGAGTCATCAAGAGTGTGGAGAAGAAGGACCCCTCTGGAGCCAAGGTAACCAAGGCTGCACTGAAGAA GAAGTGATTGCATTGTGGCATCATTTCTGTTTGTTTATGTGAATCATAATCATCATGTTTCCAGAAAACTGTTGTTTCTC TACTGTAGTTTTTCTGTTGAGAGTCCTAGGTTTTTGTTTTACCCTTATATTTTTCATTCCAGTTTGTTTATTACTGTTTT TTTTTTACTTTTAAGAAGAGTCTGA
CDS sequence (LotjaGi2g1v0077000.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAAGGAGAAGTTTCACATCAACATTGTTGTCATTGGACATGTCGACTCTGGGAAGTCAACTACCACTGGTCACTT GATCTACAAGCTTGGAGGTATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCAT TCAAGTATGCCTGGGTGCTTGACAAGCTCAAGGCGGAGCGTGAGAGAGGGATTACCATTGATATTGCTTTGTGGAAATTC GAAACCAACAAGTACTACTGCACAGTCATTGATGCACCTGGACATCGTGATTTCATCAAGAACATGATCACAGGAACATC CCAGGCCGACTGTGCCGTTCTTATTATTGATTCCACAACTGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGACAGACTC GTGAGCACGCTCTCCTTGCATTCACTCTAGGAGTCAAACAGATGATCTGTTGCTGTAATAAGATGGATGCCACTACCCCC AAGTATTCCAAGGCTAGGTATGATGAAATTGTGAAGGAAGTCTCTTCCTACTTGAAGAAGGTTGGTTACAACCCGGACAA GATTCCCTTTGTTCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGTC CAACTCTTCTTGAGGCTCTTGACCAGATCAACGAGCCAAAGAGACCCACAGACAAGCCTCTAAGGCTTCCATTGCAGGAT GTCTACAAGATTGGTGGTATTGGTACTGTGCCTGTTGGACGTGTTGAGACCGGTGTCTTGAAACCTGGTGTGTTGGTGAC TTTTGGCCCCACTGGACTGACAACTGAAGTCAAGTCCGTGGAGATGCACCATGAGGCTTTGCAAGAGGCCCTTCCAGGTG ACAATGTGGGATTCAATGTGAAGAATGTTGCAGTCAAGGATCTCAAGCGTGGTTTCGTCGCCTCCAACTCTAAGGATGAC CCTGCCAAGGAAGCTGCTAACTTCACATCCCAAGTCATCATCATGAACCATCCCGGCCAGATTGGAAACGGATATGCACC GGTGCTCGACTGCCACACATCTCACATTGCTGTGAAGTTTTCTGAGATCCTGACCAAGATTGACAGACGATCTGGCAAGG AGATTGAGAAAGAGCCTAAATTTTTGAAGAATGGTGATGCAGGTTTTGTTAAGATGATTCCTACCAAGCCCATGGTGGTT GAAACTTTCTCTGAGTATCCTCCCCTTGGTCGTTTTGCTGTGAGGGACATGCGACAAACGGTGGCCGTGGGAGTCATCAA GAGTGTGGAGAAGAAGGACCCCTCTGGAGCCAAGGTAACCAAGGCTGCACTGAAGAAGAAAAGAGTCTGA
Protein sequence (LotjaGi2g1v0077000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF ETNKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQD VYKIGGIGTVPVGRVETGVLKPGVLVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDD PAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGFVKMIPTKPMVV ETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKAALKKKRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| TIGRFAM | 1 | 433 | 433 | 2.6E-214 | ||
| PANTHER | 1 | 447 | 447 | 0.0 | – | |
| Gene3D | 1 | 228 | 228 | 1.9E-89 | – | |
| PANTHER | 1 | 447 | 447 | 0.0 | – | |
| Hamap | 2 | 432 | 431 | 51.508 | ||
| SUPERFAMILY | 3 | 249 | 247 | 3.83E-81 | ||
| ProSiteProfiles | 5 | 230 | 226 | 60.676 | ||
| Pfam | 7 | 222 | 216 | 6.4E-54 | ||
| PRINTS | 9 | 22 | 14 | 1.4E-23 | ||
| CDD | 9 | 227 | 219 | 2.51772E-157 | – | |
| ProSitePatterns | 61 | 76 | 16 | - | ||
| PRINTS | 68 | 76 | 9 | 1.4E-23 | ||
| PRINTS | 88 | 98 | 11 | 1.4E-23 | ||
| PRINTS | 104 | 115 | 12 | 1.4E-23 | ||
| PRINTS | 148 | 157 | 10 | 1.4E-23 | ||
| SUPERFAMILY | 226 | 321 | 96 | 1.44E-27 | ||
| Gene3D | 229 | 320 | 92 | 1.2E-40 | – | |
| CDD | 230 | 320 | 91 | 7.88704E-58 | – | |
| Pfam | 248 | 313 | 66 | 2.9E-13 | ||
| Pfam | 322 | 429 | 108 | 1.9E-38 | ||
| Gene3D | 323 | 430 | 108 | 3.8E-49 | – | |
| CDD | 323 | 426 | 104 | 1.80687E-67 | – | |
| SUPERFAMILY | 326 | 429 | 104 | 7.19E-41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation elongation factor activity | Functions in chain elongation during polypeptide synthesis at the ribosome. | ||
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Translational elongation | The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. |
Expression pattern of LotjaGi2g1v0077000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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