Domain Predictions — View

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cd00817

Source: CDD

Description

ValRS_core

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 10

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi2g1v0111300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Valine--tRNA ligase; TAIR: AT5G16715.1 protein EMBRYO DEFECTIVE 2247; Swiss-Prot: sp\|F4KE63\|SYVM2_ARATH Valine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr\|A0A0B2SHS3\|A0A0B2SHS3_GLYSO Valine--tRNA ligase; Found in the gene: LotjaGi2g1v0111300	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.730.10 G3DSA:3.40.50.620 G3DSA:3.90.740.10 IPR001412 IPR002300 IPR002303 IPR009008 IPR009080 IPR013155 IPR014729 IPR033705 MF_02004 NON_CYTOPLASMIC_DOMAIN PF00133 PF08264 PR00986 PS00178 PTHR11946 PTHR11946:SF93 SSF47323 SSF50677 SSF52374 TIGR00422 TRANSMEMBRANE cd00817 cd07962	27
LotjaGi2g1v0111300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Valine--tRNA ligase; TAIR: AT5G16715.1 protein EMBRYO DEFECTIVE 2247; Swiss-Prot: sp\|F4KE63\|SYVM2_ARATH Valine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr\|A0A0B2SHS3\|A0A0B2SHS3_GLYSO Valine--tRNA ligase; Found in the gene: LotjaGi2g1v0111300	Domains Coil G3DSA:1.10.287.380 G3DSA:1.10.730.10 G3DSA:3.40.50.620 G3DSA:3.90.740.10 IPR001412 IPR002300 IPR002303 IPR009008 IPR009080 IPR010978 IPR013155 IPR014729 IPR019499 IPR033705 IPR037118 MF_02004 PF00133 PF08264 PF10458 PR00986 PS00178 PTHR11946 PTHR11946:SF93 SSF46589 SSF47323 SSF50677 SSF52374 TIGR00422 cd00817 cd07962	31
LotjaGi2g1v0111300.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Valine--tRNA ligase; TAIR: AT5G16715.1 protein EMBRYO DEFECTIVE 2247; Swiss-Prot: sp\|F4KE63\|SYVM2_ARATH Valine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr\|A0A0B2SHS3\|A0A0B2SHS3_GLYSO Valine--tRNA ligase; Found in the gene: LotjaGi2g1v0111300	Domains Coil G3DSA:1.10.287.380 G3DSA:1.10.730.10 G3DSA:3.40.50.620 G3DSA:3.90.740.10 IPR001412 IPR002300 IPR002303 IPR009008 IPR009080 IPR010978 IPR013155 IPR014729 IPR019499 IPR033705 IPR037118 MF_02004 PF00133 PF08264 PF10458 PR00986 PS00178 PTHR11946 PTHR11946:SF93 SSF46589 SSF47323 SSF50677 SSF52374 TIGR00422 cd00817 cd07962	31
LotjaGi2g1v0111300.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Valine--tRNA ligase; TAIR: AT5G16715.1 protein EMBRYO DEFECTIVE 2247; Swiss-Prot: sp\|F4KE63\|SYVM2_ARATH Valine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr\|A0A0B2SHS3\|A0A0B2SHS3_GLYSO Valine--tRNA ligase; Found in the gene: LotjaGi2g1v0111300	Domains Coil G3DSA:1.10.287.380 G3DSA:1.10.730.10 G3DSA:3.40.50.620 G3DSA:3.90.740.10 IPR002300 IPR002303 IPR009008 IPR009080 IPR010978 IPR013155 IPR014729 IPR019499 IPR033705 IPR037118 PF00133 PF08264 PF10458 PR00986 PTHR11946 PTHR11946:SF93 SSF46589 SSF47323 SSF50677 SSF52374 TIGR00422 cd00817 cd07962	28
LotjaGi2g1v0111300.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Valine--tRNA ligase; TAIR: AT5G16715.1 protein EMBRYO DEFECTIVE 2247; Swiss-Prot: sp\|F4KE63\|SYVM2_ARATH Valine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr\|A0A0B2SHS3\|A0A0B2SHS3_GLYSO Valine--tRNA ligase; Found in the gene: LotjaGi2g1v0111300	Domains Coil G3DSA:1.10.287.380 G3DSA:1.10.730.10 G3DSA:3.40.50.620 G3DSA:3.90.740.10 IPR001412 IPR002300 IPR002303 IPR009008 IPR009080 IPR010978 IPR013155 IPR014729 IPR019499 IPR033705 IPR037118 MF_02004 PF00133 PF08264 PF10458 PR00986 PS00178 PTHR11946 PTHR11946:SF93 SSF46589 SSF47323 SSF50677 SSF52374 TIGR00422 cd00817 cd07962	31
LotjaGi2g1v0111300.7 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Valine--tRNA ligase; TAIR: AT5G16715.1 protein EMBRYO DEFECTIVE 2247; Swiss-Prot: sp\|F4KE63\|SYVM2_ARATH Valine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr\|A0A0B2SHS3\|A0A0B2SHS3_GLYSO Valine--tRNA ligase; Found in the gene: LotjaGi2g1v0111300	Domains Coil G3DSA:1.10.287.380 G3DSA:1.10.730.10 G3DSA:3.40.50.620 G3DSA:3.90.740.10 IPR001412 IPR002300 IPR002303 IPR009008 IPR009080 IPR010978 IPR013155 IPR014729 IPR019499 IPR033705 IPR037118 MF_02004 PF00133 PF08264 PF10458 PR00986 PS00178 PTHR11946 PTHR11946:SF93 SSF46589 SSF47323 SSF50677 SSF52374 TIGR00422 cd00817 cd07962	31
LotjaGi5g1v0305000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Valine--tRNA ligase; TAIR: AT1G14610.1 valyl-tRNA synthetase / valine-tRNA ligase (VALRS); Swiss-Prot: sp\|P93736\|SYVM1_ARATH Valine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr\|A0A151U9X6\|A0A151U9X6_CAJCA Valyl-tRNA synthetase; Found in the gene: LotjaGi5g1v0305000	Domains Coil G3DSA:1.10.730.10 G3DSA:3.40.50.620 G3DSA:3.90.740.10 IPR001412 IPR002300 IPR002303 IPR009008 IPR009080 IPR013155 IPR014729 IPR033705 MF_02004 PF00133 PF08264 PR00986 PS00178 PTHR11946 PTHR11946:SF94 SSF47323 SSF50677 SSF52374 TIGR00422 cd00817 cd00890 cd07962 mobidb-lite	27
LotjaGi5g1v0305000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Valine--tRNA ligase; TAIR: AT1G14610.1 valyl-tRNA synthetase / valine-tRNA ligase (VALRS); Swiss-Prot: sp\|P93736\|SYVM1_ARATH Valine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr\|A0A151U9X6\|A0A151U9X6_CAJCA Valyl-tRNA synthetase; Found in the gene: LotjaGi5g1v0305000	Domains Coil G3DSA:1.10.730.10 G3DSA:3.40.50.620 G3DSA:3.90.740.10 IPR001412 IPR002300 IPR002303 IPR009008 IPR009080 IPR013155 IPR014729 IPR033705 MF_02004 PF00133 PF08264 PR00986 PS00178 PTHR11946 PTHR11946:SF94 SSF47323 SSF50677 SSF52374 TIGR00422 cd00817 cd00890 cd07962 mobidb-lite	27
LotjaGi5g1v0305000.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Valine--tRNA ligase; TAIR: AT1G14610.1 valyl-tRNA synthetase / valine-tRNA ligase (VALRS); Swiss-Prot: sp\|P93736\|SYVM1_ARATH Valine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr\|A0A151U9X6\|A0A151U9X6_CAJCA Valyl-tRNA synthetase; Found in the gene: LotjaGi5g1v0305000	Domains Coil G3DSA:1.10.730.10 G3DSA:3.40.50.620 G3DSA:3.90.740.10 IPR001412 IPR002300 IPR002303 IPR009008 IPR009080 IPR013155 IPR014729 IPR033705 MF_02004 NON_CYTOPLASMIC_DOMAIN PF00133 PF08264 PR00986 PS00178 PTHR11946 PTHR11946:SF94 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF47323 SSF50677 SSF52374 SignalP-TM TIGR00422 cd00817 cd00890 cd07962 mobidb-lite	33
LotjaGi5g1v0305000.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Valine--tRNA ligase; TAIR: AT1G14610.1 valyl-tRNA synthetase / valine-tRNA ligase (VALRS); Swiss-Prot: sp\|P93736\|SYVM1_ARATH Valine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr\|A0A151U9X6\|A0A151U9X6_CAJCA Valyl-tRNA synthetase; Found in the gene: LotjaGi5g1v0305000	Domains Coil G3DSA:1.10.730.10 G3DSA:3.40.50.620 G3DSA:3.90.740.10 IPR001412 IPR002300 IPR002303 IPR009008 IPR009080 IPR013155 IPR014729 IPR033705 MF_02004 PF00133 PF08264 PR00986 PS00178 PTHR11946 PTHR11946:SF94 SSF47323 SSF50677 SSF52374 TIGR00422 cd00817 cd00890 cd07962	26

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd07962	CDD	1	10.00