Domain Predictions — View

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cd05170

Source: CDD

Description

PIKKc_SMG1

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0000184 View details of GO:0000184 AmiGO InterPro QuickGO	Biological process	Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.	Subterm of GO:0000956
GO:0004674 View details of GO:0004674 AmiGO InterPro QuickGO	Molecular function	Protein serine/threonine kinase activity	Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.	Subterm of GO:0004672

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
Lj3g3v3337380.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: serine/threonine-protein kinase SMG1 [Glycine max] gi\|356541123\|ref\|XP_003539032.1\|	Domains Coil G3DSA:1.10.1070.11 G3DSA:3.30.1010.10 IPR000403 IPR003152 IPR011009 IPR014009 IPR018936 PF00454 PF02260 PS00916 PS50290 PS51189 PS51190 PTHR11139 PTHR11139:SF71 SM00146 SM01343 SM01345 SSF56112 cd05170 mobidb-lite	22
Lj3g3v3337380.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: serine/threonine-protein kinase SMG1 [Glycine max] gi\|356541123\|ref\|XP_003539032.1\|	Domains Coil G3DSA:1.10.1070.11 G3DSA:3.30.1010.10 IPR000403 IPR011009 IPR014009 IPR018936 PF00454 PS00916 PS50290 PS51189 PTHR11139 PTHR11139:SF71 SM00146 SM01345 SSF56112 cd05170 mobidb-lite	18
Lj3g3v3337380.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: serine/threonine-protein kinase SMG1 [Glycine max] gi\|356541123\|ref\|XP_003539032.1\|	Domains Coil G3DSA:1.10.1070.11 G3DSA:3.30.1010.10 IPR000403 IPR011009 IPR018936 PF00454 PS00916 PS50290 PTHR11139 PTHR11139:SF71 SM00146 SM01345 SSF56112 cd05170 mobidb-lite	16
LotjaGi3g1v0502700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Serine/threonine-protein kinase; TAIR: AT1G50030.1 target of rapamycin; Swiss-Prot: sp\|Q8BKX6\|SMG1_MOUSE Serine/threonine-protein kinase SMG1; TrEMBL-Plants: tr\|K7LPC3\|K7LPC3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0502700	Domains Coil G3DSA:1.10.1070.11 G3DSA:3.30.1010.10 IPR000403 IPR003152 IPR011009 IPR014009 IPR016024 IPR018936 IPR031559 IPR036940 IPR039414 PF00454 PF02260 PF15785 PS00916 PS50290 PS51189 PS51190 PTHR11139 PTHR11139:SF71 SM00146 SM01343 SM01345 SSF48371 SSF56112 cd05170 mobidb-lite	28

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	25.00