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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0024300 |
Transcript ID | LotjaGi3g1v0024300.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNA exonuclease-like protein; TAIR: AT3G27970.1 Exonuclease family protein; Swiss-Prot: sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4; TrEMBL-Plants: tr|A0A0B2RL39|A0A0B2RL39_GLYSO RNA exonuclease 4; Found in the gene: LotjaGi3g1v0024300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2699331..2702461) extracted from Lotus japonicus Gifu genome v1.2.
TTTGACATTGATTTCTGCGTCTTCTTCCTCTTCCGTCGCATTAGGGTTTGAAGAGTTCCAGTGAGTTCACTCTCATAGCT TTGATCAGTGCTACACTCTATCCATTTATACAGTAAAACATTGCATTTCTCATTTGATTCATTCTGGTAATGCTAGAATT CGAAAAATCACTGATCATTTCTGTCTGATACAGTTCTGTTCATCGCTTCGTTTGCACTTGATTTGCAATCTTAATGGACA TTGAAGAAGACCCTCCTCAAAACCCAGCAAAAAGGTCAAATTCTTACTATCAATTCTGTTTTTATTTACATTTTGATCAC CATGCATGCTTTGTTAGTGTTCAATTGAGTGAAATCTAGCTCAATTAAACAATGGGGTTTGTACCCAATTCGTATTCAAG AGCATTTGTGTGGGGGTGATGAGGAACTTCAATAGTATAATTGTCAAAAAATGCTTTAGTGTTACTGTTTGATCTCACCT CTGCATGTTTCTGAATTTCATCAAATGAATGAAATTGTAGAATCTGTGGTGGAATCTTGTATGATTGTTTATTTGTATAA GCTTGTTGAAACAATTGCTGACTCCTTCATTCCTACAGGCTCAAATGCTCAGCATGCTATAAGCAGTATAAGAAGAAAGA GTCTCTGATTGAGCACATGAAAGCCTCATACCACTCTGTCCATCATCCTAGATGTGGTGTCTGTCAAAAGTATTGCAAAT CATTTGAATCTCTAAGGGAACATCTTTTCGGTTAGTTATAAGTGCTTATTCAATTTGATTGATATCAACATTATCGCCTG CATTTTTCGACTTTCGATTCACTATTTATCTTATTTGTGCCCTTTTGGTTTCCTGTGTTATAGGTCCTTTGCCTAAAGGA CTTTGTTCGAAGATTTTCTCTGAACAGGGTTGTCGGCTTTGCTTGACACTATTTGACAGCCCCAGGTCTCTCGGTGAGCA TAGAGTGACATGTCGCCTATCTTCCCCTGGTTTTGTACCCCTAGTAAGTTGGTTATTGACTACATAAGGCATTTAAATGA AACAAAAATTTCCTTTTGTGCCGTTTGCTTGGACCAGGCAAAGAAATCTGCTTACAATTAATGTTTCTTGTATTCTGTTT TGTGTTAATGTAAGGAAGTTTACGCTGTGTGCCGTCCTGTTACAGGGAATATACACAATGCCCTATATAGGCTCCCAAAT TGATCATCGTGATTCGTCTAATGAAGATCACCCTGGAGCTGTTGCATTAGACTGTGAAATGGCTGGTGGTGGAAGTGATG GATCGCTAGATCTTTGTGTAAGAGTATGCTTGGTCGATGAAGATGAGAATTTACTTTACCATGCATATGTACAGCCTCCA ATCCCTGTTACAAACTATAGGTACTTCAACCTTGTGTGATTGTTTTCCTTTACTGTGAAATAGAAAGGTGGATAAGGATA TAAATATGTTGGGGTTGACTTTACTTGACATTTTTCAGACATGATATAACTGGGATAACAGAAGATGATCTTAGAGATGC GAGGCCCCTTAAAGAAGTTAAAGAAAAGATATTGCAAATTTTATACAATGGAGAATCCATTAGCAAAGTTAGATTGGACG GAGGAAAGGCCAGGCTTCTTGTTGGGCATGCATTAGCACATGATTTAGATTGCTTGAAAATGAACTATCCAGATCACATG TTGAGGTGGGTGTTTCTTCACTAACTTACTCAATTATGCTAAATCATTCCATAATTGTTCTTGATAACCATGTTATTCCA TAACTGTTCTTGATAACCATGTCATTCACTTTTCTTTCTTTTCCCTAGTGTTGTTAAATAGCGGATATAACGGCGCTATA GAGTAGGCGTAGCGTTTTGAGGGCTCACCACTATCCGTTATTTGCCACCATTTTCTGCTCTGGGGGCTTGAAATAGCGGA TTTTGGCTTTCTGCGATCTGCGATTAACAACACTGCTTTGCCCTTTAAGCCCTTGTCCCTTGATTAATAAAATAATTGTT GGAAATCCATAGATTCGTTCTGCTTTTTACCCTTTTTCTTGGCACTTATGAGGTTATGAGTATGATGCATTTTTTGAACT ACTAGTTGCTACTTGCTAGCAACATTCATATTTCATTGTAATGATTAGTTCATTTTTTAAAGAATAACACTATTGCCTTG TAAGTTGATCACTTTTAAAAAATGTGTTAACTTCTTAAACAGTAGACCGATCATATAGAATATATTGAAAGGTGTATCAA AAAGAGTATTTTGCCATCATTTCTCATAATTGCTACAATGATCTGATTTTTCTTGATATAAATAAGTTTCTAGATTTTAG TGATCCATCCTATTTAGTCGCTTGGGTTTTTCTTACTGTACATTAAGCTAGGTTGATTTTCCTTAGTGTTTAGTTTGTAA TTTGAGAGCAGATATGTTATTTATTGGAATTAACATATTTGCTTATATTTTGTGTTGCAGAGACACTGCAATGTACCGTC CATTGATGAAAACAAACTTTGTCAGTCATTCACTCAAGTATCTTACCAGAACATATCTAGGGTAAGTCAATTTGCCCTAT AGTAATCTGATCCTATATTGTTTTAAATTGAAATGGATAAATTGCCAGTTGCATTTCACATAGTATCACCATAATGAGTT GCTATAGTAATCCTATATTGTTTTTAACTGACAACTTTGGCTTTACAGTTATGATATCCAACTCGGCACTCATGACCCAT ATGAAGATAGTATTTCTGCAATGAGGCTGTATAAGAGAATGCGAGGTCAAAATCATCAGGAGAAAAACTGCGGAACATTG ACTTCAAGTAATAACTTTGTCGGCATGTCTGATGGCTGGAAGTCTAAGGAACTTGACAACCTCACACCTGATGAACTCTT TGACATGTCAAAATCAGACTACAAGTGTTGGTGCTTGGATTTGAGACCAAGATTGGCAGCCTGAACTATTAATCATTGTT TTGTTCATAGCATCATGTTGTAGTTCATATTTCTTTAGAAACTATGAAAATTGGAAGGGGGAAATTGTTTTGCAATGATC CTTTCTGTGTTTATATCTTTCTATGCGTTAGTGTTATCCTCTGGACAGAGAAAAGAAACAGTGTGTTCAATTGGAACATG AAAAGGAGTTT
CDS sequence (LotjaGi3g1v0024300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACATTGAAGAAGACCCTCCTCAAAACCCAGCAAAAAGGCTCAAATGCTCAGCATGCTATAAGCAGTATAAGAAGAA AGAGTCTCTGATTGAGCACATGAAAGCCTCATACCACTCTGTCCATCATCCTAGATGTGGTGTCTGTCAAAAGTATTGCA AATCATTTGAATCTCTAAGGGAACATCTTTTCGGTCCTTTGCCTAAAGGACTTTGTTCGAAGATTTTCTCTGAACAGGGT TGTCGGCTTTGCTTGACACTATTTGACAGCCCCAGGTCTCTCGGTGAGCATAGAGTGACATGTCGCCTATCTTCCCCTGG TTTTGTACCCCTAGGAATATACACAATGCCCTATATAGGCTCCCAAATTGATCATCGTGATTCGTCTAATGAAGATCACC CTGGAGCTGTTGCATTAGACTGTGAAATGGCTGGTGGTGGAAGTGATGGATCGCTAGATCTTTGTGTAAGAGTATGCTTG GTCGATGAAGATGAGAATTTACTTTACCATGCATATGTACAGCCTCCAATCCCTGTTACAAACTATAGACATGATATAAC TGGGATAACAGAAGATGATCTTAGAGATGCGAGGCCCCTTAAAGAAGTTAAAGAAAAGATATTGCAAATTTTATACAATG GAGAATCCATTAGCAAAGTTAGATTGGACGGAGGAAAGGCCAGGCTTCTTGTTGGGCATGCATTAGCACATGATTTAGAT TGCTTGAAAATGAACTATCCAGATCACATGTTGAGAGACACTGCAATGTACCGTCCATTGATGAAAACAAACTTTGTCAG TCATTCACTCAAGTATCTTACCAGAACATATCTAGGTTATGATATCCAACTCGGCACTCATGACCCATATGAAGATAGTA TTTCTGCAATGAGGCTGTATAAGAGAATGCGAGGTCAAAATCATCAGGAGAAAAACTGCGGAACATTGACTTCAAGTAAT AACTTTGTCGGCATGTCTGATGGCTGGAAGTCTAAGGAACTTGACAACCTCACACCTGATGAACTCTTTGACATGTCAAA ATCAGACTACAAGTGTTGGTGCTTGGATTTGAGACCAAGATTGGCAGCCTGA
Protein sequence (LotjaGi3g1v0024300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDIEEDPPQNPAKRLKCSACYKQYKKKESLIEHMKASYHSVHHPRCGVCQKYCKSFESLREHLFGPLPKGLCSKIFSEQG CRLCLTLFDSPRSLGEHRVTCRLSSPGFVPLGIYTMPYIGSQIDHRDSSNEDHPGAVALDCEMAGGGSDGSLDLCVRVCL VDEDENLLYHAYVQPPIPVTNYRHDITGITEDDLRDARPLKEVKEKILQILYNGESISKVRLDGGKARLLVGHALAHDLD CLKMNYPDHMLRDTAMYRPLMKTNFVSHSLKYLTRTYLGYDIQLGTHDPYEDSISAMRLYKRMRGQNHQEKNCGTLTSSN NFVGMSDGWKSKELDNLTPDELFDMSKSDYKCWCLDLRPRLAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 13 | 356 | 344 | 4.7E-153 | – | |
PANTHER | 13 | 356 | 344 | 4.7E-153 | – | |
ProSiteProfiles | 15 | 44 | 30 | 10.741 | ||
ProSitePatterns | 17 | 39 | 23 | - | ||
Gene3D | 133 | 320 | 188 | 1.6E-47 | ||
SMART | 135 | 309 | 175 | 1.3E-35 | ||
SUPERFAMILY | 137 | 305 | 169 | 9.62E-28 | ||
Pfam | 137 | 300 | 164 | 4.1E-11 | ||
CDD | 137 | 301 | 165 | 1.50193E-74 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
Molecular function | 3'-5' exonuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end. |
Expression pattern of LotjaGi3g1v0024300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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