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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0073600 |
| Transcript ID | LotjaGi5g1v0073600.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr|K7LHH2|K7LHH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0073600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12217911..12225749) extracted from Lotus japonicus Gifu genome v1.2.
TTTCACTTTTCCCGTACACAGCACATTACTTCCTCGTTTCTCTCTTATTTCTCTCTCTCTCTCCTCTTTCTCTCGCGCTC GTTCTATCTTGTGTTCTCTCGTCCTTTATCCTTCTCTCTCTCTCTCTCACACATTTCTTCTTCTTCTTCTTCCTCGATCT CACCGTAAGTCCATTTCTCTAAACCCTAATCCTCATTTCTCGATTCCACTCCTCTCTTCACTGTTCTTCACCCTCTCGCT TCTTCTTCTCCTTCTCTTAGGGTTAGCATTTTCGATTTCTGTGCTACATTTTCAACAAACTGCTCCTGTTTGCTCCAAAT TGACAACAATGTGATCAATTTTTCACGCTTTTCGTCATTTTCCGCTTACTTCACTGTGTTTTTCAGCGTTTTCCGAGTTC TGTAGCGAAACGGAACAACGAACATGCATTTCTCATTTCTTCCTAGGGTTTTTCTTCGTTTACTGTTTATACCGATGGTT GAAGCTAAATTAGTTGAAATTTCTTGAAAATGTTAGGTTCTTGTTACTTTCGTTTACCTATTTGAACTGAACGGAAGATG CATGTAAAAAAATTCAAGAAAAAGACACTAGTGATTGTTTTGTGTTAGTGGGGAAATGTTCACGCGTTGCATTTACTACT GCATTTAATTCGAAATGGTGCATTTTGAGTGTGTTGGTCAGTTTGTGGTTTTGTTCTTGAATCTTGACAACGCAGCAGAA TCTAGTGGAGTTTTTAGCACGTGATTTTGAAGCATGCTAATATTTTATTAATGGAGACTAATTTAATCTAATTTAAACAA ATGGAGATTGTTTCAGATGATTGCCAGTAGCTTTTTAATATTTCATTGTTTAGCAATTTTGGTAAATATTGACCACTTTG ATTTCCACTTAATACTCTCATTGAATGTTTGTTGTTTCGCATAATCTTAAATTGTGCTTATGACTTTCTGATTGACACAC TAGCATTAAGTGTTATCTGTTGATGAGGCGTTTTCTGTTTTAGGCAGGATTTATGTATTATTTCATTAGTTTCTTGTGTA GGTAATTTTCCTGGATGATAATGGGTGACAAAGGGGAAAAATCATGTCCCATTTGCACTGAGGAGATGGACTTGACTGAT CAGCAGCTGAAGCCATGCAAATGCGGCTACGAGGTTCAAACTTTTATTTACCGATGGATACGGATCTATTGTCGTGAATG ACTTGAATTTATCATGTTTGTGTTTCTTAATTTGTTGTTGAACACCCTGGTTTGATGCTTGTTCATGTGGTTGTGCATTA TCCTTATTCCAAAATCCGCTTTTTATGAAAATGGAAAGTTGATATCTAAACTGTACAGCATATTTGGCATTACTTAAGAG AAATAGTGAATTCTTATATATCGTAATGCCTATCCTGATAAATCATTTTTGTTTGTTCGCATTCTTTACTTTTCTGACAG ATATGTGTATGGTGTTGGCACCATATAATGGAAATGGCACAGAAGAATGAATCCGAGGGTCGTTGTCCCGCCTGCCGTTC ACCTTATGATAAAGATCGTATTACATCAATGGCAGCTAACTGCCGAAGGTTGTTTTGGTTATGGCAGGAGTTCTAATTAC CATATCACATTTTATTGTTAAGCTATTGTTAGTGATAGATACTAATATGTTTTGCTTGCTTAAGCAGATTGGTTGCTGAA ATGAATTCAAAGCATAAAAAGAAAATGCAGAAATTAAAGCCTAAATCATCAGATGGAAGGAAACATCTTAATGATGTTAG AGTCATTCAACGCCACTTAGTGTACATAATTGGACTGCCTCTTAATCTTGCGGATGAAGATGTGAGTTATTACAATATTG TTCTGTATCTAACTTTTGCAGATGCATTTGTGTGAGACTGTGCAAGGCATAGTCCATATTGGTTTTTGCATCATTTAAAT TGTAAATTATCTTATCCATTTCTATCCTTAATTAATAACATTTTGTTTGTTTCAATTATACCAGCTACTTCAGCGTAGAG AGTACTTTGGCAGGTATGGAAAGGTTATGAAAGTGTCAATATCTCGTACAGCAACTGGCTTAATTCAACATTCTGCAAAC AACACCTGTTGTGTGTAAGTTGTTATGATTGTCTCAAAAGCAATCACCCTACATTGAATTTCAACTAGAAATTATATTCT TTCCCCTGTTTATTTTATTATTTCTTTTATTTTTGTGTCTATTGAAGTATTGGTTTTGTCATGTTTCTTTCTATGTTTGG ATACCAGTTCTTGTTGGCTGTTGTCTTGTATTTCTTGAATGAAAATTTCTTTTCTTCAGGTATATAAGTTACTCAAAAGA GTCTGAAGCTGTTCGATGTATTCAATCAGTGCATTGTTTTGTATTAGAAGGTCGACCATTGAGGTGAGTGTATGTCATTT TTATTGGGTTATGACTTGTGAGGCTTTCATGATCTTGTGAGTTGTGATGATATGTGGTTATTTACATTTGCAGGGCCTGT TTTGGAACCACAAAGTATTGCCATGCATGGTTGAGAAATGTGGTAAAATAACACTCGAAGTCAAATTTATGAATGTTTTG TTACACGTAACACTGTGCTTTTGCTAATATATAAATTATCTTGCTGGTCCAGCCTTGCAACAATAGAGAATGTTTATATC TACATGACCATGGTTCTCACGAAGATAGCTTTACCAAAGATGAACTAGTATTAGCATTTGCAAGGTATGATCGATTTTCA TCCCGTGTGCCTTTTCTCCATTTTGAACTTGCTAGTTGCTATGTCTTATATATGTATCAGCTGGTTATCCTTTAGCCAAA TTATTAATTCAGTTGGGAGTTCAAATAGTAAGACTTACTCCCAAATCAATGTCTTTTTACTTCTCTGGGGCTGCTGGATG ATTGCTTTCAGTTTTTATATTTTAATAAAACCTACGTAGTAGTTAAATATACAAAACAGATTGGTTATTTCATGCATAAC TTAATCATTTAGGTTTCCATCTAATTTACATAGATATCTCAAAAGAGGTATTGGGCGTACGCATGTCCTAATTCATTGTT GCTTTTATATTATTCCTCCTGTATGACCCCGTTTTATTATTTATTTATTTTGTTTGGATTTCTTTTCCCTTCATCTTGCT AGTTAGACTTGCTCATAATTTTCAGTACTTGGTATTATCTGTTGTTTGGGTTATGTCATCTTTGATAATATAGTTTTGGT GTTTATATTTTGGATGTTAAAGGAGTAGAGTCCTACAAATCATTGGCGCTACAAATAATTTGCATCGGCGTTCAGGGAGT GTTTTACCTCCACCAGTAGATGATGCTAGACATATGTCATCAGCCACCAAATTAGTGTCTAAAAGTCCTTCAGATGTGAG TTTAATGAACATCACTTTCATTGTAAATTTGTCTATTGTGGATGATATGTCACTTGAATATTCAACTATCTTTGCAGTTA TTAGGACTAGGCAGTGGACTAATTATCATATATCATTAACCTCACGTTTTTATTAAACTTGAAAATTTAGAACCAGATTA AAGGATCCTGTTCTGGCACTGGGGCTGCCAATTTGACCGCACTTCCTGCAGTAACTTCTTGGTAATTGGTTTACTGACTA AGTGACTAGTAGTATTTTCACATTAATTTGCTTGTAGCGTGAATGCTGACTCTTTTGGTATGTTTTACTAGGGCTAGGTG TGTATCTGGTAGCCTTCGGCAGGATTCGACTTCATCACGTTCTAATAATCTGGCCAATAGAAAGGTTGAAGCATCTAATG ATCCCCAAGCCCTTGTAGGAGTTGCTTGCACTGAAAGGTCTACTCTGAATAAAAGATCAGGGGAAGCTGAAGATAGCTCT AAAGTGCACTCCAATGATGTGTTCATTCCTTCAGAGTTGAACAAGCATCTTCACATTGGTGGAAATTCACAAACACGTGA GTCAAATGTTTTCAATGAAGTTACTGTGTTGAAACATCCTAGCATTGTATTGTCTAACTGTGAAACAACTCTGGCAGCTT TTATGGGCAGTGATCAAGACATGGTAGCACCTTCTGTGAGCGAAAGCTTCCCGGAGCTCTCCAGATCACATTGTGATTTC AGCACTAACAAAGCTGTTTCAAATAGGGATGTGCAGGGCTTATGTTCAGGGTTATCGTCTATTAGCATCAGTAGCCATCT TGAAGATTCAAATTTCACTCCTGATTCAGACAGATTACTTTCTACTCAAAACTCTATCAATTCCTCTGTAGGGAAGCATT CAGAAGATAATGAGTATTGGAATGAACAATCAACTATACCAGCTTTTTGGGAAGATATTGTTGTAGATGATGTACTAAAC ATAGACCAAGAACCACAAAATTTCAGTAAAAGCATCAACAATTCGCCTTGTCTCTCTCAGAATGTAAACAAATCAACCCA TCAAGCAGAGCCACAAGATCAAATTTGTCACCAAAGTCATTTGAGGAGACCTTCTGAGTCTTTTACTGAACCCTTGGAGA CAGGATTTGTGAAGCATGTGGAGAGTGAGGATATTACAGGAGTTGATGATAAGGCTGCATCAGACATGGGAGAAAACAGC ATTATATCTGACATTTTGTCTTTGGAATTAGATGCATGGGAAGATTCACTTGTTAAGCTGTTGGATGAAAGTGATGAACC ATACACACTCTTTAAAGCACCTACTTTGCGGAAAGTCCAAAACAAGAATCAGTCTAGGTTTTCCTTTGCCAGGCAGGATC ATTTCACAAATGACGCATCTGACTTGCAGCAATCGTTTGGGATTATTGGACATGAACCAAACGGGAACTATGCCTCGGGT GGTTTAATGGGAAACAAAGATATGCTCACTGAGAAACACCCACATGTTTTCCCATCAGGCAATTCTGTGCAACCTGATAA ATTTGTTGGAGGTCAGTCTTTTGTGCCCTTTATCGATTAATAACATGCTTATGTGCATGTTTGAAAAAAAATCAAGGCCA GAATCGTGTAAAAGCTTAAGCTACTGTGAGTAGCTTTTGCTGAAGTAAAGCGATTCCAAGCCTCTGAAATTTGGACTCAA ACATGCCATAAGTACTCCATATTTTTTAACTTGAGGGTTATTGTTTCCTTCCATTCAGGTCTTAGCTGCTGTCAATATTG CTTATACTTTATTGAGTTTATATGCATAAATCTTTTAGTGCTCAAACTTTCATTTCTAGTTTGGTGTTTTAATTTACTGT GGCATTTTGCTTGTTTCTATTGATTGGATTTTCATTCCTTTATCCTTTACCTTCTTAAAGTTCCTGTAATCTCTCTTCAG CTTTATCTTTCTTGTTCACTGTTTAATAGTAGGAGAAATATGGTCTTTTGAGCACTTGCTACTCAGTGGATGAGTCTTTT TTGGGTGCTTCATTGGCTCATTAAGTAGTTCTGGGGCTTATTTTAGGTTTAAGATTATTTTAGTGCTTCTCATCCCCACA GCTGCTACCATGTATATAAGTAGGGGTAATTTGTTCTTCACAGGATTTTTGTTATGTGCTTGTGAACTGAAGTTTAATAG TACTTTTCGCTTCTACAGTTTGTTTTATTTTTTCGGCTGTTATTCTTCCTGTATATATTTTATCTTCGTTTCCACTGTGT TGTCTATATGGATTGGATTGTAATCGGACAATCTTGCGCTGAGAAAAGTGTTTTGCAAGAACTTCAACTTTCCTGTGACA GCCAATTAAGGAGCTAAACATCTGCCAAAAGAACCTCAACTTTTTGGTCATAACTTATTAAGGAATCAAACTGTAATAAA AAGAGCATTTTGATAATATTTATTAATTACAACAGATTTTTTAGGTCATAAATGCCATGTAGTGTTATTATGATTGATTA TTTTATATGAAGTTAGATTTTTTTTTGTATTTTCTATATTTTTTATCAACAAAAATATTTTTAGTTAAGCAGAGGTCCTG AGTTGGTAATAATCGAAGTTTTTTCCTGATGGTTGATAATTTTAGGACCTGAAACAATACTTCACTTCTATCTGTGACAT ATCTGGTCTCCTTACCCCTTATCGAATGACAAAAATTTAGAGCTTTAACATGACAAAAGTTTTTTCCCTTATTATTGATT GATGTTAGTTATGGTTGCTGTGGAACTTAGTTTTGATCAAACTTATATTTTCGCTCTTGTTTATAATTGTTGTTTATCAG TGGCAAAAGCTCATGCTTCAGGCCCACCTGGATTTGCAATGGCCAGCAGAATACCTCCTGGGTTTTCTTGTGGGAGAGTA GAACGGGGTTGTAATAGTTCTGGTATAACTTTCTTTATAGTTTGATACTCCACTTGTGTTATTTTCCCCTTCTGTTTCTA TTCTTCGCTAAATTTACTTCTTACAGAGAAATTTCTCATAGATCTTCTACTTTCCAGTGAACTATTTGCAACAGCAGCAT ATTCCTCCATCTGCAAGTAATGCCAGGATAGGAGAGGTTCAATTTAACAATCCTTCAGTATTGGACCTTGGTAAGAACAT AATGGAGCAAAGGCTGAATAGTGCATCATTTGACCTGAGGCAAACTTTACTTCCGCGATATAGTCTTGATGAAGATGAGG CTAGACTTAAGCTGTTAATGCAACAATGCCCACCTTCACAGAATTTTAAACTTCCAGATCAAATTGAAAATAGATTTTCG CCTCAAAGTGATGCTTATAGAATTTCTTCGAGGTTTCTTGATCAATTTCAGGCTACTACTCCATCGATTTATGAACAGTT ACATTCTCAACAGTTCAGCAGTAATATTCTCGCATCAAATAACCAGTGGGGCGTCTGGAATGATGCCAAGTATTTCAGTG GCCTGTCTATGTCAGAAGTATTGAATAGTGAGAGAGTGGGATTGAACAATATCATGCCTACTTACGACAATGTCAAGTAT TAAGAATTCACTGATCTAGTTCACTCATGGTGGTGATTGTCTCAGTAATCTCTTCATTGCACAAATGAGCTCTTAAATAG TCATTGGTAATCGTCAACTACTCTTTTTTGTATGCTTAGCTTTACTGCTAAGCATTGGAATCTGGGTTTCCATATTATAG TTGGTGACATAACTGGCAAATGGTGTCAGTTTTTTATATGGGGTGCATGTACCTTGGCCTTGAAGGTTAGTATGGTGAGT TTAACTCGTGATTTGGCAATATTATGTATTTGCATTTGTGTTTACATAGTAGGATGAGGTCTGGACTGTAACTTATAATC TTAAACTTCACTTCTAGTTTTTCTTTTAAATTCTTGCTGTTTATATGATTAGTTTAGGATAATGACTGTTATGTCCTCTA TCTCTGCAGTTGAACTGGATGTCAAGCAGTTTGTCATCAAAGTACAGAAACTGATAGAGAGCCAAGCAGTTTGTCATCAA GCTACAGAAACTGATAGAGAGCTAAGATGTAAGCCTTATGGATCGGTAATTCATGCTAAGAATGGTGAAATATGATATCG AAACTTGATGTTATCTTTAGACCTGAAGTAGTTTGTTCAGAATTTGTTACCAATCTTGAACTTGGAACTCCTGCTAGAAC TGACAATGTAGTTAGTGTATGCATATGAAAATGAATATAGTAGCTTCTGGGAAACACTTTAGACTAGGACGGAATGGAGC ATAGAGCTGGCAACATCTCTATTTTTTTCACCACCTTAGAATTACATGCATTTACTATTCAGTTGAGGTGATTACTAAAT AGTAGGATATAAACTTATATTTATAGACTTCGGTCATGCACCCTCGAAATATTATTTTACTAAATTGATTTGAAACTTAG TGTCTTTGATTTGAACAAATGATGATATATTTTTAAATTATGAATTTCTCAGTCAAATAATTTGAAATTTTATTTTAAT
CDS sequence (LotjaGi5g1v0073600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAATGGGTGACAAAGGGGAAAAATCATGTCCCATTTGCACTGAGGAGATGGACTTGACTGATCAGCAGCTGAAGCC ATGCAAATGCGGCTACGAGATATGTGTATGGTGTTGGCACCATATAATGGAAATGGCACAGAAGAATGAATCCGAGGGTC GTTGTCCCGCCTGCCGTTCACCTTATGATAAAGATCGTATTACATCAATGGCAGCTAACTGCCGAAGATTGGTTGCTGAA ATGAATTCAAAGCATAAAAAGAAAATGCAGAAATTAAAGCCTAAATCATCAGATGGAAGGAAACATCTTAATGATGTTAG AGTCATTCAACGCCACTTAGTGTACATAATTGGACTGCCTCTTAATCTTGCGGATGAAGATCTACTTCAGCGTAGAGAGT ACTTTGGCAGGTATGGAAAGGTTATGAAAGTGTCAATATCTCGTACAGCAACTGGCTTAATTCAACATTCTGCAAACAAC ACCTGTTGTGTGTATATAAGTTACTCAAAAGAGTCTGAAGCTGTTCGATGTATTCAATCAGTGCATTGTTTTGTATTAGA AGGTCGACCATTGAGGGCCTGTTTTGGAACCACAAAGTATTGCCATGCATGGTTGAGAAATGTGCCTTGCAACAATAGAG AATGTTTATATCTACATGACCATGGTTCTCACGAAGATAGCTTTACCAAAGATGAACTAGTATTAGCATTTGCAAGGAGT AGAGTCCTACAAATCATTGGCGCTACAAATAATTTGCATCGGCGTTCAGGGAGTGTTTTACCTCCACCAGTAGATGATGC TAGACATATGTCATCAGCCACCAAATTAGTGTCTAAAAGTCCTTCAGATAACCAGATTAAAGGATCCTGTTCTGGCACTG GGGCTGCCAATTTGACCGCACTTCCTGCAGTAACTTCTTGGGCTAGGTGTGTATCTGGTAGCCTTCGGCAGGATTCGACT TCATCACGTTCTAATAATCTGGCCAATAGAAAGGTTGAAGCATCTAATGATCCCCAAGCCCTTGTAGGAGTTGCTTGCAC TGAAAGGTCTACTCTGAATAAAAGATCAGGGGAAGCTGAAGATAGCTCTAAAGTGCACTCCAATGATGTGTTCATTCCTT CAGAGTTGAACAAGCATCTTCACATTGGTGGAAATTCACAAACACCTTTTATGGGCAGTGATCAAGACATGGTAGCACCT TCTGTGAGCGAAAGCTTCCCGGAGCTCTCCAGATCACATTGTGATTTCAGCACTAACAAAGCTGTTTCAAATAGGGATGT GCAGGGCTTATGTTCAGGGTTATCGTCTATTAGCATCAGTAGCCATCTTGAAGATTCAAATTTCACTCCTGATTCAGACA GATTACTTTCTACTCAAAACTCTATCAATTCCTCTGTAGGGAAGCATTCAGAAGATAATGAGTATTGGAATGAACAATCA ACTATACCAGCTTTTTGGGAAGATATTGTTGTAGATGATGTACTAAACATAGACCAAGAACCACAAAATTTCAGTAAAAG CATCAACAATTCGCCTTGTCTCTCTCAGAATGTAAACAAATCAACCCATCAAGCAGAGCCACAAGATCAAATTTGTCACC AAAGTCATTTGAGGAGACCTTCTGAGTCTTTTACTGAACCCTTGGAGACAGGATTTGTGAAGCATGTGGAGAGTGAGGAT ATTACAGGAGTTGATGATAAGGCTGCATCAGACATGGGAGAAAACAGCATTATATCTGACATTTTGTCTTTGGAATTAGA TGCATGGGAAGATTCACTTGTTAAGCTGTTGGATGAAAGTGATGAACCATACACACTCTTTAAAGCACCTACTTTGCGGA AAGTCCAAAACAAGAATCAGTCTAGGTTTTCCTTTGCCAGGCAGGATCATTTCACAAATGACGCATCTGACTTGCAGCAA TCGTTTGGGATTATTGGACATGAACCAAACGGGAACTATGCCTCGGGTGGTTTAATGGGAAACAAAGATATGCTCACTGA GAAACACCCACATGTTTTCCCATCAGGCAATTCTGTGCAACCTGATAAATTTGTTGGAGTGGCAAAAGCTCATGCTTCAG GCCCACCTGGATTTGCAATGGCCAGCAGAATACCTCCTGGGTTTTCTTGTGGGAGAGTAGAACGGGGTTGTAATAGTTCT GTGAACTATTTGCAACAGCAGCATATTCCTCCATCTGCAAGTAATGCCAGGATAGGAGAGGTTCAATTTAACAATCCTTC AGTATTGGACCTTGGTAAGAACATAATGGAGCAAAGGCTGAATAGTGCATCATTTGACCTGAGGCAAACTTTACTTCCGC GATATAGTCTTGATGAAGATGAGGCTAGACTTAAGCTGTTAATGCAACAATGCCCACCTTCACAGAATTTTAAACTTCCA GATCAAATTGAAAATAGATTTTCGCCTCAAAGTGATGCTTATAGAATTTCTTCGAGGTTTCTTGATCAATTTCAGGCTAC TACTCCATCGATTTATGAACAGTTACATTCTCAACAGTTCAGCAGTAATATTCTCGCATCAAATAACCAGTGGGGCGTCT GGAATGATGCCAAGTATTTCAGTGGCCTGTCTATGTCAGAAGTATTGAATAGTGAGAGAGTGGGATTGAACAATATCATG CCTACTTACGACAATGTCAAGTATTAA
Protein sequence (LotjaGi5g1v0073600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIMGDKGEKSCPICTEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAQKNESEGRCPACRSPYDKDRITSMAANCRRLVAE MNSKHKKKMQKLKPKSSDGRKHLNDVRVIQRHLVYIIGLPLNLADEDLLQRREYFGRYGKVMKVSISRTATGLIQHSANN TCCVYISYSKESEAVRCIQSVHCFVLEGRPLRACFGTTKYCHAWLRNVPCNNRECLYLHDHGSHEDSFTKDELVLAFARS RVLQIIGATNNLHRRSGSVLPPPVDDARHMSSATKLVSKSPSDNQIKGSCSGTGAANLTALPAVTSWARCVSGSLRQDST SSRSNNLANRKVEASNDPQALVGVACTERSTLNKRSGEAEDSSKVHSNDVFIPSELNKHLHIGGNSQTPFMGSDQDMVAP SVSESFPELSRSHCDFSTNKAVSNRDVQGLCSGLSSISISSHLEDSNFTPDSDRLLSTQNSINSSVGKHSEDNEYWNEQS TIPAFWEDIVVDDVLNIDQEPQNFSKSINNSPCLSQNVNKSTHQAEPQDQICHQSHLRRPSESFTEPLETGFVKHVESED ITGVDDKAASDMGENSIISDILSLELDAWEDSLVKLLDESDEPYTLFKAPTLRKVQNKNQSRFSFARQDHFTNDASDLQQ SFGIIGHEPNGNYASGGLMGNKDMLTEKHPHVFPSGNSVQPDKFVGVAKAHASGPPGFAMASRIPPGFSCGRVERGCNSS VNYLQQQHIPPSASNARIGEVQFNNPSVLDLGKNIMEQRLNSASFDLRQTLLPRYSLDEDEARLKLLMQQCPPSQNFKLP DQIENRFSPQSDAYRISSRFLDQFQATTPSIYEQLHSQQFSSNILASNNQWGVWNDAKYFSGLSMSEVLNSERVGLNNIM PTYDNVKY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 888 | 886 | 0.0 | ||
| PANTHER | 3 | 888 | 886 | 0.0 | – | |
| Gene3D | 3 | 81 | 79 | 3.3E-21 | ||
| SUPERFAMILY | 5 | 69 | 65 | 4.86E-14 | – | |
| CDD | 11 | 60 | 50 | 3.61964E-22 | ||
| ProSiteProfiles | 11 | 59 | 49 | 10.055 | ||
| Pfam | 11 | 63 | 53 | 2.9E-21 | – | |
| SUPERFAMILY | 106 | 192 | 87 | 9.23E-13 | ||
| CDD | 107 | 206 | 100 | 1.10286E-46 | ||
| ProSiteProfiles | 112 | 198 | 87 | 9.729 | ||
| Gene3D | 113 | 194 | 82 | 5.1E-23 | ||
| SMART | 113 | 194 | 82 | 3.1E-8 | ||
| SMART | 113 | 194 | 82 | 1.4E-4 | ||
| Pfam | 114 | 192 | 79 | 1.7E-4 | ||
| MobiDBLite | 315 | 334 | 20 | - | – | |
| MobiDBLite | 315 | 333 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Cellular component | CCR4-NOT complex | The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins. |
Expression pattern of LotjaGi5g1v0073600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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