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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0073600 |
| Transcript ID | LotjaGi5g1v0073600.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CCR4-NOT transcription complex subunit 4; TAIR: AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr|K7LHH2|K7LHH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0073600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12217911..12225741) extracted from Lotus japonicus Gifu genome v1.2.
TTCCCGTACACAGCACATTACTTCCTCGTTTCTCTCTTATTTCTCTCTCTCTCTCCTCTTTCTCTCGCGCTCGTTCTATC TTGTGTTCTCTCGTCCTTTATCCTTCTCTCTCTCTCTCTCACACATTTCTTCTTCTTCTTCTTCCTCGATCTCACCGTAA GTCCATTTCTCTAAACCCTAATCCTCATTTCTCGATTCCACTCCTCTCTTCACTGTTCTTCACCCTCTCGCTTCTTCTTC TCCTTCTCTTAGGGTTAGCATTTTCGATTTCTGTGCTACATTTTCAACAAACTGCTCCTGTTTGCTCCAAATTGACAACA ATGTGATCAATTTTTCACGCTTTTCGTCATTTTCCGCTTACTTCACTGTGTTTTTCAGCGTTTTCCGAGTTCTGTAGCGA AACGGAACAACGAACATGCATTTCTCATTTCTTCCTAGGGTTTTTCTTCGTTTACTGTTTATACCGATGGTTGAAGCTAA ATTAGTTGAAATTTCTTGAAAATGTTAGGTTCTTGTTACTTTCGTTTACCTATTTGAACTGAACGGAAGATGCATGTAAA AAAATTCAAGAAAAAGACACTAGTGATTGTTTTGTGTTAGTGGGGAAATGTTCACGCGTTGCATTTACTACTGCATTTAA TTCGAAATGGTGCATTTTGAGTGTGTTGGTCAGTTTGTGGTTTTGTTCTTGAATCTTGACAACGCAGCAGAATCTAGTGG AGTTTTTAGCACGTGATTTTGAAGCATGCTAATATTTTATTAATGGAGACTAATTTAATCTAATTTAAACAAATGGAGAT TGTTTCAGATGATTGCCAGTAGCTTTTTAATATTTCATTGTTTAGCAATTTTGGTAAATATTGACCACTTTGATTTCCAC TTAATACTCTCATTGAATGTTTGTTGTTTCGCATAATCTTAAATTGTGCTTATGACTTTCTGATTGACACACTAGCATTA AGTGTTATCTGTTGATGAGGCGTTTTCTGTTTTAGGCAGGATTTATGTATTATTTCATTAGTTTCTTGTGTAGGTAATTT TCCTGGATGATAATGGGTGACAAAGGGGAAAAATCATGTCCCATTTGCACTGAGGAGATGGACTTGACTGATCAGCAGCT GAAGCCATGCAAATGCGGCTACGAGGTTCAAACTTTTATTTACCGATGGATACGGATCTATTGTCGTGAATGACTTGAAT TTATCATGTTTGTGTTTCTTAATTTGTTGTTGAACACCCTGGTTTGATGCTTGTTCATGTGGTTGTGCATTATCCTTATT CCAAAATCCGCTTTTTATGAAAATGGAAAGTTGATATCTAAACTGTACAGCATATTTGGCATTACTTAAGAGAAATAGTG AATTCTTATATATCGTAATGCCTATCCTGATAAATCATTTTTGTTTGTTCGCATTCTTTACTTTTCTGACAGATATGTGT ATGGTGTTGGCACCATATAATGGAAATGGCACAGAAGAATGAATCCGAGGGTCGTTGTCCCGCCTGCCGTTCACCTTATG ATAAAGATCGTATTACATCAATGGCAGCTAACTGCCGAAGGTTGTTTTGGTTATGGCAGGAGTTCTAATTACCATATCAC ATTTTATTGTTAAGCTATTGTTAGTGATAGATACTAATATGTTTTGCTTGCTTAAGCAGATTGGTTGCTGAAATGAATTC AAAGCATAAAAAGAAAATGCAGAAATTAAAGCCTAAATCATCAGATGGAAGGAAACATCTTAATGATGTTAGAGTCATTC AACGCCACTTAGTGTACATAATTGGACTGCCTCTTAATCTTGCGGATGAAGATGTGAGTTATTACAATATTGTTCTGTAT CTAACTTTTGCAGATGCATTTGTGTGAGACTGTGCAAGGCATAGTCCATATTGGTTTTTGCATCATTTAAATTGTAAATT ATCTTATCCATTTCTATCCTTAATTAATAACATTTTGTTTGTTTCAATTATACCAGCTACTTCAGCGTAGAGAGTACTTT GGCAGGTATGGAAAGGTTATGAAAGTGTCAATATCTCGTACAGCAACTGGCTTAATTCAACATTCTGCAAACAACACCTG TTGTGTGTAAGTTGTTATGATTGTCTCAAAAGCAATCACCCTACATTGAATTTCAACTAGAAATTATATTCTTTCCCCTG TTTATTTTATTATTTCTTTTATTTTTGTGTCTATTGAAGTATTGGTTTTGTCATGTTTCTTTCTATGTTTGGATACCAGT TCTTGTTGGCTGTTGTCTTGTATTTCTTGAATGAAAATTTCTTTTCTTCAGGTATATAAGTTACTCAAAAGAGTCTGAAG CTGTTCGATGTATTCAATCAGTGCATTGTTTTGTATTAGAAGGTCGACCATTGAGGTGAGTGTATGTCATTTTTATTGGG TTATGACTTGTGAGGCTTTCATGATCTTGTGAGTTGTGATGATATGTGGTTATTTACATTTGCAGGGCCTGTTTTGGAAC CACAAAGTATTGCCATGCATGGTTGAGAAATGTGGTAAAATAACACTCGAAGTCAAATTTATGAATGTTTTGTTACACGT AACACTGTGCTTTTGCTAATATATAAATTATCTTGCTGGTCCAGCCTTGCAACAATAGAGAATGTTTATATCTACATGAC CATGGTTCTCACGAAGATAGCTTTACCAAAGATGAACTAGTATTAGCATTTGCAAGGTATGATCGATTTTCATCCCGTGT GCCTTTTCTCCATTTTGAACTTGCTAGTTGCTATGTCTTATATATGTATCAGCTGGTTATCCTTTAGCCAAATTATTAAT TCAGTTGGGAGTTCAAATAGTAAGACTTACTCCCAAATCAATGTCTTTTTACTTCTCTGGGGCTGCTGGATGATTGCTTT CAGTTTTTATATTTTAATAAAACCTACGTAGTAGTTAAATATACAAAACAGATTGGTTATTTCATGCATAACTTAATCAT TTAGGTTTCCATCTAATTTACATAGATATCTCAAAAGAGGTATTGGGCGTACGCATGTCCTAATTCATTGTTGCTTTTAT ATTATTCCTCCTGTATGACCCCGTTTTATTATTTATTTATTTTGTTTGGATTTCTTTTCCCTTCATCTTGCTAGTTAGAC TTGCTCATAATTTTCAGTACTTGGTATTATCTGTTGTTTGGGTTATGTCATCTTTGATAATATAGTTTTGGTGTTTATAT TTTGGATGTTAAAGGAGTAGAGTCCTACAAATCATTGGCGCTACAAATAATTTGCATCGGCGTTCAGGGAGTGTTTTACC TCCACCAGTAGATGATGCTAGACATATGTCATCAGCCACCAAATTAGTGTCTAAAAGTCCTTCAGATGTGAGTTTAATGA ACATCACTTTCATTGTAAATTTGTCTATTGTGGATGATATGTCACTTGAATATTCAACTATCTTTGCAGTTATTAGGACT AGGCAGTGGACTAATTATCATATATCATTAACCTCACGTTTTTATTAAACTTGAAAATTTAGAACCAGATTAAAGGATCC TGTTCTGGCACTGGGGCTGCCAATTTGACCGCACTTCCTGCAGTAACTTCTTGGTAATTGGTTTACTGACTAAGTGACTA GTAGTATTTTCACATTAATTTGCTTGTAGCGTGAATGCTGACTCTTTTGGTATGTTTTACTAGGGCTAGGTGTGTATCTG GTAGCCTTCGGCAGGATTCGACTTCATCACGTTCTAATAATCTGGCCAATAGAAAGGTTGAAGCATCTAATGATCCCCAA GCCCTTGTAGGAGTTGCTTGCACTGAAAGGTCTACTCTGAATAAAAGATCAGGGGAAGCTGAAGATAGCTCTAAAGTGCA CTCCAATGATGTGTTCATTCCTTCAGAGTTGAACAAGCATCTTCACATTGGTGGAAATTCACAAACACGTGAGTCAAATG TTTTCAATGAAGTTACTGTGTTGAAACATCCTAGCATTGTATTGTCTAACTGTGAAACAACTCTGGCAGCTTTTATGGGC AGTGATCAAGACATGGTAGCACCTTCTGTGAGCGAAAGCTTCCCGGAGCTCTCCAGATCACATTGTGATTTCAGCACTAA CAAAGCTGTTTCAAATAGGGATGTGCAGGGCTTATGTTCAGGGTTATCGTCTATTAGCATCAGTAGCCATCTTGAAGATT CAAATTTCACTCCTGATTCAGACAGATTACTTTCTACTCAAAACTCTATCAATTCCTCTGTAGGGAAGCATTCAGAAGAT AATGAGTATTGGAATGAACAATCAACTATACCAGCTTTTTGGGAAGATATTGTTGTAGATGATGTACTAAACATAGACCA AGAACCACAAAATTTCAGTAAAAGCATCAACAATTCGCCTTGTCTCTCTCAGAATGTAAACAAATCAACCCATCAAGCAG AGCCACAAGATCAAATTTGTCACCAAAGTCATTTGAGGAGACCTTCTGAGTCTTTTACTGAACCCTTGGAGACAGGATTT GTGAAGCATGTGGAGAGTGAGGATATTACAGGAGTTGATGATAAGGCTGCATCAGACATGGGAGAAAACAGCATTATATC TGACATTTTGTCTTTGGAATTAGATGCATGGGAAGATTCACTTGTTAAGCTGTTGGATGAAAGTGATGAACCATACACAC TCTTTAAAGCACCTACTTTGCGGAAAGTCCAAAACAAGAATCAGTCTAGGTTTTCCTTTGCCAGGCAGGATCATTTCACA AATGACGCATCTGACTTGCAGCAATCGTTTGGGATTATTGGACATGAACCAAACGGGAACTATGCCTCGGGTGGTTTAAT GGGAAACAAAGATATGCTCACTGAGAAACACCCACATGTTTTCCCATCAGGCAATTCTGTGCAACCTGATAAATTTGTTG GAGGTCAGTCTTTTGTGCCCTTTATCGATTAATAACATGCTTATGTGCATGTTTGAAAAAAAATCAAGGCCAGAATCGTG TAAAAGCTTAAGCTACTGTGAGTAGCTTTTGCTGAAGTAAAGCGATTCCAAGCCTCTGAAATTTGGACTCAAACATGCCA TAAGTACTCCATATTTTTTAACTTGAGGGTTATTGTTTCCTTCCATTCAGGTCTTAGCTGCTGTCAATATTGCTTATACT TTATTGAGTTTATATGCATAAATCTTTTAGTGCTCAAACTTTCATTTCTAGTTTGGTGTTTTAATTTACTGTGGCATTTT GCTTGTTTCTATTGATTGGATTTTCATTCCTTTATCCTTTACCTTCTTAAAGTTCCTGTAATCTCTCTTCAGCTTTATCT TTCTTGTTCACTGTTTAATAGTAGGAGAAATATGGTCTTTTGAGCACTTGCTACTCAGTGGATGAGTCTTTTTTGGGTGC TTCATTGGCTCATTAAGTAGTTCTGGGGCTTATTTTAGGTTTAAGATTATTTTAGTGCTTCTCATCCCCACAGCTGCTAC CATGTATATAAGTAGGGGTAATTTGTTCTTCACAGGATTTTTGTTATGTGCTTGTGAACTGAAGTTTAATAGTACTTTTC GCTTCTACAGTTTGTTTTATTTTTTCGGCTGTTATTCTTCCTGTATATATTTTATCTTCGTTTCCACTGTGTTGTCTATA TGGATTGGATTGTAATCGGACAATCTTGCGCTGAGAAAAGTGTTTTGCAAGAACTTCAACTTTCCTGTGACAGCCAATTA AGGAGCTAAACATCTGCCAAAAGAACCTCAACTTTTTGGTCATAACTTATTAAGGAATCAAACTGTAATAAAAAGAGCAT TTTGATAATATTTATTAATTACAACAGATTTTTTAGGTCATAAATGCCATGTAGTGTTATTATGATTGATTATTTTATAT GAAGTTAGATTTTTTTTTGTATTTTCTATATTTTTTATCAACAAAAATATTTTTAGTTAAGCAGAGGTCCTGAGTTGGTA ATAATCGAAGTTTTTTCCTGATGGTTGATAATTTTAGGACCTGAAACAATACTTCACTTCTATCTGTGACATATCTGGTC TCCTTACCCCTTATCGAATGACAAAAATTTAGAGCTTTAACATGACAAAAGTTTTTTCCCTTATTATTGATTGATGTTAG TTATGGTTGCTGTGGAACTTAGTTTTGATCAAACTTATATTTTCGCTCTTGTTTATAATTGTTGTTTATCAGTGGCAAAA GCTCATGCTTCAGGCCCACCTGGATTTGCAATGGCCAGCAGAATACCTCCTGGGTTTTCTTGTGGGAGAGTAGAACGGGG TTGTAATAGTTCTGGTATAACTTTCTTTATAGTTTGATACTCCACTTGTGTTATTTTCCCCTTCTGTTTCTATTCTTCGC TAAATTTACTTCTTACAGAGAAATTTCTCATAGATCTTCTACTTTCCAGTGAACTATTTGCAACAGCAGCATATTCCTCC ATCTGCAAGTAATGCCAGGATAGGAGAGGTTCAATTTAACAATCCTTCAGTATTGGACCTTGGTAAGAACATAATGGAGC AAAGGCTGAATAGTGCATCATTTGACCTGAGGCAAACTTTACTTCCGCGATATAGTCTTGATGAAGATGAGGCTAGACTT AAGCTGTTAATGCAACAATGCCCACCTTCACAGAATTTTAAACTTCCAGATCAAATTGAAAATAGATTTTCGCCTCAAAG TGATGCTTATAGAATTTCTTCGAGGTTTCTTGATCAATTTCAGGCTACTACTCCATCGATTTATGAACAGTTACATTCTC AACAGTTCAGCAGTAATATTCTCGCATCAAATAACCAGTGGGGCGTCTGGAATGATGCCAAGTATTTCAGTGGCCTGTCT ATGTCAGAAGTATTGAATAGTGAGAGAGTGGGATTGAACAATATCATGCCTACTTACGACAATGTCAAGTATTAAGAATT CACTGATCTAGTTCACTCATGGTGGTGATTGTCTCAGTAATCTCTTCATTGCACAAATGAGCTCTTAAATAGTCATTGGT AATCGTCAACTACTCTTTTTTGTATGCTTAGCTTTACTGCTAAGCATTGGAATCTGGGTTTCCATATTATAGTTGGTGAC ATAACTGGCAAATGGTGTCAGTTTTTTATATGGGGTGCATGTACCTTGGCCTTGAAGGTTAGTATGGTGAGTTTAACTCG TGATTTGGCAATATTATGTATTTGCATTTGTGTTTACATAGTAGGATGAGGTCTGGACTGTAACTTATAATCTTAAACTT CACTTCTAGTTTTTCTTTTAAATTCTTGCTGTTTATATGATTAGTTTAGGATAATGACTGTTATGTCCTCTATCTCTGCA GTTGAACTGGATGTCAAGCAGTTTGTCATCAAAGTACAGAAACTGATAGAGAGCCAAGCAGTTTGTCATCAAGCTACAGA AACTGATAGAGAGCTAAGATGTAAGCCTTATGGATCGGTAATTCATGCTAAGAATGGTGAAATATGATATCGAAACTTGA TGTTATCTTTAGACCTGAAGTAGTTTGTTCAGAATTTGTTACCAATCTTGAACTTGGAACTCCTGCTAGAACTGACAATG TAGTTAGTGTATGCATATGAAAATGAATATAGTAGCTTCTGGGAAACACTTTAGACTAGGACGGAATGGAGCATAGAGCT GGCAACATCTCTATTTTTTTCACCACCTTAGAATTACATGCATTTACTATTCAGTTGAGGTGATTACTAAATAGTAGGAT ATAAACTTATATTTATAGACTTCGGTCATGCACCCTCGAAATATTATTTTACTAAATTGATTTGAAACTTAGTGTCTTTG ATTTGAACAAATGATGATATATTTTTAAATTATGAATTTCTCAGTCAAATAATTTGAAATTTTATTTTAAT
CDS sequence (LotjaGi5g1v0073600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAATGGGTGACAAAGGGGAAAAATCATGTCCCATTTGCACTGAGGAGATGGACTTGACTGATCAGCAGCTGAAGCC ATGCAAATGCGGCTACGAGATATGTGTATGGTGTTGGCACCATATAATGGAAATGGCACAGAAGAATGAATCCGAGGGTC GTTGTCCCGCCTGCCGTTCACCTTATGATAAAGATCGTATTACATCAATGGCAGCTAACTGCCGAAGATTGGTTGCTGAA ATGAATTCAAAGCATAAAAAGAAAATGCAGAAATTAAAGCCTAAATCATCAGATGGAAGGAAACATCTTAATGATGTTAG AGTCATTCAACGCCACTTAGTGTACATAATTGGACTGCCTCTTAATCTTGCGGATGAAGATCTACTTCAGCGTAGAGAGT ACTTTGGCAGGTATGGAAAGGTTATGAAAGTGTCAATATCTCGTACAGCAACTGGCTTAATTCAACATTCTGCAAACAAC ACCTGTTGTGTGTATATAAGTTACTCAAAAGAGTCTGAAGCTGTTCGATGTATTCAATCAGTGCATTGTTTTGTATTAGA AGGTCGACCATTGAGGGCCTGTTTTGGAACCACAAAGTATTGCCATGCATGGTTGAGAAATGTGCCTTGCAACAATAGAG AATGTTTATATCTACATGACCATGGTTCTCACGAAGATAGCTTTACCAAAGATGAACTAGTATTAGCATTTGCAAGGAGT AGAGTCCTACAAATCATTGGCGCTACAAATAATTTGCATCGGCGTTCAGGGAGTGTTTTACCTCCACCAGTAGATGATGC TAGACATATGTCATCAGCCACCAAATTAGTGTCTAAAAGTCCTTCAGATAACCAGATTAAAGGATCCTGTTCTGGCACTG GGGCTGCCAATTTGACCGCACTTCCTGCAGTAACTTCTTGGGCTAGGTGTGTATCTGGTAGCCTTCGGCAGGATTCGACT TCATCACGTTCTAATAATCTGGCCAATAGAAAGGTTGAAGCATCTAATGATCCCCAAGCCCTTGTAGGAGTTGCTTGCAC TGAAAGGTCTACTCTGAATAAAAGATCAGGGGAAGCTGAAGATAGCTCTAAAGTGCACTCCAATGATGTGTTCATTCCTT CAGAGTTGAACAAGCATCTTCACATTGGTGGAAATTCACAAACACCTTTTATGGGCAGTGATCAAGACATGGTAGCACCT TCTGTGAGCGAAAGCTTCCCGGAGCTCTCCAGATCACATTGTGATTTCAGCACTAACAAAGCTGTTTCAAATAGGGATGT GCAGGGCTTATGTTCAGGGTTATCGTCTATTAGCATCAGTAGCCATCTTGAAGATTCAAATTTCACTCCTGATTCAGACA GATTACTTTCTACTCAAAACTCTATCAATTCCTCTGTAGGGAAGCATTCAGAAGATAATGAGTATTGGAATGAACAATCA ACTATACCAGCTTTTTGGGAAGATATTGTTGTAGATGATGTACTAAACATAGACCAAGAACCACAAAATTTCAGTAAAAG CATCAACAATTCGCCTTGTCTCTCTCAGAATGTAAACAAATCAACCCATCAAGCAGAGCCACAAGATCAAATTTGTCACC AAAGTCATTTGAGGAGACCTTCTGAGTCTTTTACTGAACCCTTGGAGACAGGATTTGTGAAGCATGTGGAGAGTGAGGAT ATTACAGGAGTTGATGATAAGGCTGCATCAGACATGGGAGAAAACAGCATTATATCTGACATTTTGTCTTTGGAATTAGA TGCATGGGAAGATTCACTTGTTAAGCTGTTGGATGAAAGTGATGAACCATACACACTCTTTAAAGCACCTACTTTGCGGA AAGTCCAAAACAAGAATCAGTCTAGGTTTTCCTTTGCCAGGCAGGATCATTTCACAAATGACGCATCTGACTTGCAGCAA TCGTTTGGGATTATTGGACATGAACCAAACGGGAACTATGCCTCGGGTGGTTTAATGGGAAACAAAGATATGCTCACTGA GAAACACCCACATGTTTTCCCATCAGGCAATTCTGTGCAACCTGATAAATTTGTTGGAGTGGCAAAAGCTCATGCTTCAG GCCCACCTGGATTTGCAATGGCCAGCAGAATACCTCCTGGGTTTTCTTGTGGGAGAGTAGAACGGGGTTGTAATAGTTCT GTGAACTATTTGCAACAGCAGCATATTCCTCCATCTGCAAGTAATGCCAGGATAGGAGAGGTTCAATTTAACAATCCTTC AGTATTGGACCTTGGTAAGAACATAATGGAGCAAAGGCTGAATAGTGCATCATTTGACCTGAGGCAAACTTTACTTCCGC GATATAGTCTTGATGAAGATGAGGCTAGACTTAAGCTGTTAATGCAACAATGCCCACCTTCACAGAATTTTAAACTTCCA GATCAAATTGAAAATAGATTTTCGCCTCAAAGTGATGCTTATAGAATTTCTTCGAGGTTTCTTGATCAATTTCAGGCTAC TACTCCATCGATTTATGAACAGTTACATTCTCAACAGTTCAGCAGTAATATTCTCGCATCAAATAACCAGTGGGGCGTCT GGAATGATGCCAAGTATTTCAGTGGCCTGTCTATGTCAGAAGTATTGAATAGTGAGAGAGTGGGATTGAACAATATCATG CCTACTTACGACAATGTCAAGTATTAA
Protein sequence (LotjaGi5g1v0073600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIMGDKGEKSCPICTEEMDLTDQQLKPCKCGYEICVWCWHHIMEMAQKNESEGRCPACRSPYDKDRITSMAANCRRLVAE MNSKHKKKMQKLKPKSSDGRKHLNDVRVIQRHLVYIIGLPLNLADEDLLQRREYFGRYGKVMKVSISRTATGLIQHSANN TCCVYISYSKESEAVRCIQSVHCFVLEGRPLRACFGTTKYCHAWLRNVPCNNRECLYLHDHGSHEDSFTKDELVLAFARS RVLQIIGATNNLHRRSGSVLPPPVDDARHMSSATKLVSKSPSDNQIKGSCSGTGAANLTALPAVTSWARCVSGSLRQDST SSRSNNLANRKVEASNDPQALVGVACTERSTLNKRSGEAEDSSKVHSNDVFIPSELNKHLHIGGNSQTPFMGSDQDMVAP SVSESFPELSRSHCDFSTNKAVSNRDVQGLCSGLSSISISSHLEDSNFTPDSDRLLSTQNSINSSVGKHSEDNEYWNEQS TIPAFWEDIVVDDVLNIDQEPQNFSKSINNSPCLSQNVNKSTHQAEPQDQICHQSHLRRPSESFTEPLETGFVKHVESED ITGVDDKAASDMGENSIISDILSLELDAWEDSLVKLLDESDEPYTLFKAPTLRKVQNKNQSRFSFARQDHFTNDASDLQQ SFGIIGHEPNGNYASGGLMGNKDMLTEKHPHVFPSGNSVQPDKFVGVAKAHASGPPGFAMASRIPPGFSCGRVERGCNSS VNYLQQQHIPPSASNARIGEVQFNNPSVLDLGKNIMEQRLNSASFDLRQTLLPRYSLDEDEARLKLLMQQCPPSQNFKLP DQIENRFSPQSDAYRISSRFLDQFQATTPSIYEQLHSQQFSSNILASNNQWGVWNDAKYFSGLSMSEVLNSERVGLNNIM PTYDNVKY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 888 | 886 | 0.0 | ||
| PANTHER | 3 | 888 | 886 | 0.0 | – | |
| Gene3D | 3 | 81 | 79 | 3.3E-21 | ||
| SUPERFAMILY | 5 | 69 | 65 | 4.86E-14 | – | |
| CDD | 11 | 60 | 50 | 3.61964E-22 | ||
| ProSiteProfiles | 11 | 59 | 49 | 10.055 | ||
| Pfam | 11 | 63 | 53 | 2.9E-21 | – | |
| SUPERFAMILY | 106 | 192 | 87 | 9.23E-13 | ||
| CDD | 107 | 206 | 100 | 1.10286E-46 | ||
| ProSiteProfiles | 112 | 198 | 87 | 9.729 | ||
| Gene3D | 113 | 194 | 82 | 5.1E-23 | ||
| SMART | 113 | 194 | 82 | 3.1E-8 | ||
| SMART | 113 | 194 | 82 | 1.4E-4 | ||
| Pfam | 114 | 192 | 79 | 1.7E-4 | ||
| MobiDBLite | 315 | 334 | 20 | - | – | |
| MobiDBLite | 315 | 333 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Cellular component | CCR4-NOT complex | The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins. |
Expression pattern of LotjaGi5g1v0073600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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