Domain Predictions — View

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cd17996

Source: CDD

Description

DEXHc_SMARCA2_SMARCA4

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 12

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0478100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent helicase BRM; TAIR: AT2G46020.2 transcription regulatory protein SNF2; Swiss-Prot: sp\|Q6EVK6\|BRM_ARATH ATP-dependent helicase BRM; TrEMBL-Plants: tr\|I1N3S1\|I1N3S1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0478100	Domains Coil G3DSA:1.20.920.10 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001487 IPR001650 IPR014001 IPR014978 IPR027417 IPR031056 IPR036427 IPR038718 PF00176 PF00271 PF08880 PS51192 PS51194 PS51666 PTHR10799 PTHR10799:SF978 SM00297 SM00487 SM00490 SM00951 SSF47370 SSF52540 SignalP-TM cd17996 cd18793 mobidb-lite	31
LotjaGi1g1v0478100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent helicase family protein; TAIR: AT2G46020.2 transcription regulatory protein SNF2; Swiss-Prot: sp\|Q6EVK6\|BRM_ARATH ATP-dependent helicase BRM; TrEMBL-Plants: tr\|I1N3S1\|I1N3S1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0478100	Domains Coil G3DSA:1.20.920.10 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001487 IPR001650 IPR014001 IPR014978 IPR027417 IPR031056 IPR036427 IPR038718 PF00176 PF00271 PF08880 PS51192 PS51194 PS51666 PTHR10799 PTHR10799:SF978 SM00297 SM00487 SM00490 SM00951 SSF47370 SSF52540 cd17996 cd18793 mobidb-lite	30
LotjaGi2g1v0457100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase protein; TAIR: AT3G06010.1 SNF2/Brahma-type chromatin-remodeling protein CHR12; Swiss-Prot: sp\|F4J9M5\|CHR12_ARATH Probable ATP-dependent DNA helicase CHR12; TrEMBL-Plants: tr\|I1LFS4\|I1LFS4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0457100	Domains G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001650 IPR014001 IPR027417 IPR029295 IPR038718 PF00176 PF00271 PF14619 PS51192 PS51194 PTHR10799 PTHR10799:SF854 SM00487 SM00490 SM01314 SSF52540 cd17996 cd18793 mobidb-lite	22
LotjaGi3g1v0384500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent helicase BRM; TAIR: AT2G46020.2 transcription regulatory protein SNF2; Swiss-Prot: sp\|Q6EVK6\|BRM_ARATH ATP-dependent helicase BRM; TrEMBL-Plants: tr\|I1MKV5\|I1MKV5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0384500	Domains Coil G3DSA:1.20.920.10 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001487 IPR001650 IPR014001 IPR014978 IPR027417 IPR031056 IPR036427 IPR038718 PF00176 PF00271 PF08880 PS51192 PS51194 PS51666 PTHR10799 PTHR10799:SF978 SM00297 SM00487 SM00490 SM00951 SSF47370 SSF52540 cd04369 cd17996 cd18793 mobidb-lite	31
LotjaGi3g1v0384500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent helicase family protein; TAIR: AT2G46020.2 transcription regulatory protein SNF2; Swiss-Prot: sp\|Q6EVK6\|BRM_ARATH ATP-dependent helicase BRM; TrEMBL-Plants: tr\|I1MKV5\|I1MKV5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0384500	Domains Coil G3DSA:1.20.920.10 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001487 IPR001650 IPR014001 IPR014978 IPR027417 IPR031056 IPR036427 IPR038718 PF00176 PF00271 PF08880 PS51192 PS51194 PS51666 PTHR10799 PTHR10799:SF978 SM00297 SM00487 SM00490 SM00951 SSF47370 SSF52540 cd04369 cd17996 cd18793 mobidb-lite	31
LotjaGi4g1v0346800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromatin remodeling 1; TAIR: AT2G28290.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|F4IHS2\|SYD_ARATH Chromatin structure-remodeling complex protein SYD; TrEMBL-Plants: tr\|V7CA49\|V7CA49_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0346800	Domains Coil G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001650 IPR014001 IPR014012 IPR014978 IPR027417 IPR029295 IPR038718 PF00176 PF00271 PF14619 PS51192 PS51194 PS51204 PTHR10799 PTHR10799:SF973 SM00487 SM00490 SM00951 SM01314 SSF52540 cd17996 cd18793 mobidb-lite	27
LotjaGi5g1v0247500_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Helicase, putative; TAIR: AT2G28290.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|F4IHS2\|SYD_ARATH Chromatin structure-remodeling complex protein SYD; TrEMBL-Plants: tr\|U5G6B8\|U5G6B8_POPTR Uncharacterized protein; Found in the gene: LotjaGi5g1v0247500_LC	Domains G3DSA:3.40.50.10810 IPR000330 IPR014001 IPR027417 IPR038718 PF00176 PS51192 PTHR10799 PTHR10799:SF973 SSF52540 cd17996	11
LotjaGi5g1v0316700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase protein; TAIR: AT3G06010.1 SNF2/Brahma-type chromatin-remodeling protein CHR12; Swiss-Prot: sp\|F4J9M5\|CHR12_ARATH Probable ATP-dependent DNA helicase CHR12; TrEMBL-Plants: tr\|A0A0S3SMF5\|A0A0S3SMF5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0316700	Domains Coil G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001650 IPR014001 IPR027417 IPR029295 IPR038718 PF00176 PF00271 PF14619 PS51192 PS51194 PTHR10799 PTHR10799:SF854 SM00487 SM00490 SM01314 SSF52540 cd17996 cd18793 mobidb-lite	23
LotjaGi5g1v0316700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase protein; TAIR: AT3G06010.1 SNF2/Brahma-type chromatin-remodeling protein CHR12; Swiss-Prot: sp\|F4J9M5\|CHR12_ARATH Probable ATP-dependent DNA helicase CHR12; TrEMBL-Plants: tr\|K7LLB3\|K7LLB3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0316700	Domains Coil G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001650 IPR014001 IPR027417 IPR029295 IPR038718 PF00176 PF00271 PF14619 PS51192 PS51194 PTHR10799 PTHR10799:SF854 SM00487 SM00490 SM01314 SSF52540 cd17996 cd18793 mobidb-lite	23
LotjaGi5g1v0316700.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase protein; TAIR: AT3G06010.1 SNF2/Brahma-type chromatin-remodeling protein CHR12; Swiss-Prot: sp\|F4J9M5\|CHR12_ARATH Probable ATP-dependent DNA helicase CHR12; TrEMBL-Plants: tr\|A0A0R0I5I9\|A0A0R0I5I9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0316700	Domains Coil G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001650 IPR014001 IPR027417 IPR029295 IPR038718 PF00176 PF00271 PF14619 PS51192 PS51194 PTHR10799 PTHR10799:SF854 SM00487 SM00490 SM01314 SSF52540 cd17996 cd18793 mobidb-lite	23
LotjaGi5g1v0316700.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase protein; TAIR: AT3G06010.1 SNF2/Brahma-type chromatin-remodeling protein CHR12; Swiss-Prot: sp\|F4J9M5\|CHR12_ARATH Probable ATP-dependent DNA helicase CHR12; TrEMBL-Plants: tr\|A0A0L9TZW8\|A0A0L9TZW8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0316700	Domains Coil G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001650 IPR014001 IPR027417 IPR029295 IPR038718 PF00176 PF00271 PF14619 PS51192 PS51194 PTHR10799 PTHR10799:SF854 SM00487 SM00490 SM01314 SSF52540 cd17996 cd18793 mobidb-lite	23
LotjaGi5g1v0316700.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase protein; TAIR: AT3G06010.1 SNF2/Brahma-type chromatin-remodeling protein CHR12; Swiss-Prot: sp\|F4J9M5\|CHR12_ARATH Probable ATP-dependent DNA helicase CHR12; TrEMBL-Plants: tr\|I1NGB6\|I1NGB6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0316700	Domains Coil G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001650 IPR014001 IPR027417 IPR029295 IPR038718 PF00176 PF00271 PF14619 PS51192 PS51194 PTHR10799 PTHR10799:SF854 SM00487 SM00490 SM01314 SSF52540 cd17996 cd18793 mobidb-lite	23

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	8.33