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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0316700 |
| Transcript ID | LotjaGi5g1v0316700.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA/RNA helicase protein; TAIR: AT3G06010.1 SNF2/Brahma-type chromatin-remodeling protein CHR12; Swiss-Prot: sp|F4J9M5|CHR12_ARATH Probable ATP-dependent DNA helicase CHR12; TrEMBL-Plants: tr|I1NGB6|I1NGB6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0316700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:63438405..63444505) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGAGATTGCGCCGTCCACTGTATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATCAGTTAAAAAAGAAACG GGATGTTGAGGTGACTTTTTTATTTTTCAGCTAGCCCCCCAACAATTTGTTATGGGTTTGAAGTTTCCTTCCACCTTGGA TAACATAAATTGTAGTAGTCCAAGGTGGAAGGTAAATTACTAAACAATTTGTAAACTAAACAAGGCATATAGTGTGATGG TCCAGTTTCATTTTTCTGATATATGCATGAATTTTCTAGTATCTGAATGGGGAATTAATTTACACCATACTGCTTATCTC ATATATATCCTTAAATGCAGAGACTGTCAAGATTAGAAGAGGTGGAGAAAAACCATATAGAAACTAGAAAAAGGAAATTT TTTGCAGAAGTACTTGATACTGTCCGTGATTTCCAATTACAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGA TGGCATCCAGGTACACTATTCCCCATTCATTTGTTATAAATCATTTATATTAATTCGGAGATATGTATGTATATCTATAT ATATATATATATATATATTTTGATGTATGTAGGTGTACTGTAACTTTTGGCCCATTAGAATTACAAGTTTATGTGTCCTC TTCATATGATAATTAGGCATGTTAGGTGTATGCATGGACTTGAAGAGCTTTTTTGTTTCTAACTTTAACTTTTGTGAAAT TTGATTTATGTGCCAGTTGCATGTTTGATTTAGATCTCTATCTCTTCCTTAATTTCTCCTAAATTGTTATATTTTCTTTT TGTGCTTCAATTCTAGACCAAAAAAAGATATTAAAGCTTTGTTGAAATTCTGATTCTATATCAGGGAGCTTGGACCTAAC CTGTTAGAATTTATTGAGGTAGTTCCATAGTGGTCAAATAAAGGTCAATGGTATTCTCTTCTAAATAATAAGTTTTTAGT GTTAAACTACATTTCAATATATGTGTGATAAAACATAAAACATGTGATGAAAGAAAAGGTAAAGAGAGATCAAAGGGGAA ACAAGGTGCATAGGGGAACATTCAAGGCAAGTTATGATACAGAAATGATGATACTTGTTTAAATTCCAAAATGCTAGTGA TTAGTTTGTTAGAAGTACTTTAGAGGAAAAAGTTTCACAATTGTAAATAGAAAGAGGTAACTGATGGTTCCAGAAGTCAA TTACTAGAATTGCCTCAGTATTTAAAATTTTGCAGAGAATGACTGTTTTTTCATTAATATAGTGCGTGTGTGCGTGACCA TGTGTCAATTGCCCATGCTTTTATTGGTTTGGTTACATGATGAAGCTCTTACTCCTGATGAGAATTTTGTTTATTTGTAA AAATGTTAAAGAAATTCTGAACTTGATTCTGTCTTTTTCATTTCCTGGATAGATGAGACTTTTTATGACATGTTTGCTCT TCATCAACTAGAGATATAGTCAAAGTAGCCCTTATAAAGGCTTTGAGTCTTTGGCAAATGACAATCATCACCTTACAAAG CTAGCTTTTGGGCTGAGTTTGGCCTAACCCAAATTATAAGAATAAGGATTATGAATGATTATAATTAATTTTGCAGGCAT GGCATGGAAGGCAAAGACAACGAGCAACCCGAGCAGAGAAATTGAGATTCCAAGCCTTGAAGTCTGACGATCAAGAAGCT TACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTACGCTTCTTGAAGAAACAAATAAACTACTTGTAAATTT AGGAGCAGCTGTTCAACGTCAAAAGGACAACAAACATTTAGATGGTATTGAACCCTTGGAAGAGTCCGAAGCTGATTTGC CTGAGTCAGATGCTTCAAAGAATGGGGTTTCTAAGGAATCACCTCTAGATGAAGAGATAGATTCTGATCATAATGGTGAT TCTAGAGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACACTCGATTCAGGAAAAAGTAAGTCTCTGCAATTC ACTTCATTTCACTTCTTGGACGAAAAATGCAACGAATTTTTTCTATGAAATCTGTGGGTTTTGTTGAATTTATTCCTTAT TGGTTATTAGACATTTACCATAACAGTTGATTTAGGATAATATTATATGTTTGGCTTCTATTTGTGTAAAACACATGAGG GATTGACGGCCTTGCTCCATTGATATTTTCTATTTTCTTGTTGTTTTGCTTATATTTTAATCTATGAGTTCTTTTGTCAA GGAAAACCAAATTAATCATTCCTTATTAGTTGTTTCTGGAATAAAAGGTTCAATACACTGGAAATATAACAATCTTAATC ATTTACAGATCACTGAGCAACCGTCTATACTTCAAGGTGGGGAATTAAGACAATACCAGATAGAGGGGCTCCAATGGATG ATTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGACTTGGGAAGACAATACAAACAATTTCGCT TATAGCACATCTTCTGGAATACAAGGGTGTAACTGGTCCACACTTGATTGTTGCTCCAAAGGCTGTTCTGCCAAATTGGA TGAGTGAATTCTCAACATGGGTTCCTAGGTATGTCCTGGGAAGACATTGTATATTATTTCCTCTTTTGCTTCCCTTGTGG GGAGAAGGAATAGTATTCTATCTCTGAATTATGTGCATCCCATCAAATCACGTGTGCCCTTTCTTTCTGATTCAGCATTA CTACTGTTCTTTACGATGGAAGGCTGGAAGAAAGGAAAGCAATGAAGGAAGAATTGTCAGGAGAGGGGAAATTTAATGTT CTTATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCATTGGCGCTACTTGATTGTGGATGA AGGGCACCGATTGAAGAATCATGAGTCTGCTCTAGCAAGAACCTTGGACTCTGGGTATGATTCTACATGAGCAATATTGA TGACACTTATTAATACATTTACTTCCCTAGATTCTTGGTTGTATATATTTCTATTTTATATAGAAAAATGCTAAACAGCT TAAGTCGCATGGATGATACGACACACGACAAGAGTAACACATAAAATTAGTATAAAATCAATAGAGAAAACAAATATTAA ATCAAAAGAGAGAATCAATGTTCTAAATGTCATCATGCGTCATTTAATCATTTTAGACATAATAAATTGCTATTATTTAC TCTAATTATTGTGCTATTTCCATTTATATCAGTATACGGCTACAACACAACAAGGCTAGTGATTTAAGTGTCCTTCCTTG CTTGCTGGCAGCTATATTTAACTAATGCAAAATAGATACGATGAAAGGAAAGAGGGATAGCTTTCAAAACCATGCATTAC TTAGTTAAAGCATCCTGCAATCAAACAATTCATTACCTGACAGTGGTACTACCAGTCAGGTGGTTTAGTGCCTCTTCTCT AATTTTTGAATTTCATTTGTGTGCAGCTATCACATTCAACGAAGACTTCTTTTGACTGGTACCCCAATTCAGAACAATTT GCAGGAATTGTGGTCCCTGCTTAATTTTCTCCTTCCTAACATTTTCAACTCAGTTCAGAATTTCGAGGACTGGTTTAATG CTCCCTTTGCAGACCGAGTTGATGTCTCTTTAACAGATGAAGAACAGCTATTGATCATCCGGCGTCTGCATCAAGTGTGT TTCTCTCTTCTAACTTCTAATTCTCTAGCTCTTTTCAACTTCTTTCTGATGTTTTCCATTCATTCCTTAGGTGATAAGGC CCTTCATCTTAAGAAGGAAAAAGGACGAGGTAGAAAAATGTCTTCCTGAGAAATCTCAGGTCATACTCAAATGTGATATG TCCGCCTGGCAGAAAGTATATTATCAACAAGTTACTGATGTAGGCAGAGTTGGCTTAGACAATGGTCTGTATCTATTTTT CATTTTCCATTTATCCCTTAACCCACTTCTCCTTTCAAGTTTCAAATTCGTAAAAATTGCAAATCTCTTCCCATATACTT TGGTTTTGAATATTTGGTATGCTAAAGTTATTCATTTTTTCCCAACTCCACTGATATAGCCTGTGAATTTCATTGTATTT TCAATATGCTTATTAATCAGTTTAGCCTGTCTTTTAGGAAGTAAGCCACGAGCCTATTTTCCCTTCAGTTGTAATTATTC CTTATTAGTGTGTTTTACCTGTTGTAACTTTGTTAAGAATTGGTGACATATGTTTATTTCTTAGCTCAACATAAATGTGG GTTGCAAACTTGCAATCACCTGTTGTTGAGATCTTGTAGTTTTCTTTTATAAAAAAAAAGCACTATTTCCCAGATTTCTC AAAACTTGCGTTGCAAGCTTATTCTGACTTATGGATCAATTTGTAGGTTCTGGAAAATCAAAAAGTCTACAGAACTTAAC AATGCAACTCAGAAAGTGTTGCAACCATCCCTACCTCTTTGTGGGAGATTATGATATGTATAAACGTAAGGAGATTGTCA GAGCATCGGGTAAGTTTGAACTTCTAGACCGTTTGCTACCAAAACTTCGCAGAGCTGGACACAGAGTCCTCCTTTTCTCA CAAATGACTCGACTCATGGACGTTCTTGAAATTTATTTGCGACTTCATGATTTCAAGTATCTTAGACTTGATGGCTCAAC AAAAACAGAGGAAAGAGGCACTCTGCTAAAGAAATTCAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTGAGCACCC GTGCGGGGGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATTTTTGACAGTGATTGGAACCCGCAAATGGAT CAACAAGCAGAGGACCGAGCACATCGCATTGGACAAAAGAAGGAAGTTAGGGTTTTTGTCTTGGTTAGTGTGGGATCAAT AGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATTCAGGCAGGACTTTTCAACACTA CTTCAACAGGTTTGTAGTCTTGATACTAGTACTATGTCCTGGCAATATTTGTTGTTATGTTTTGGCAAATGTCTGAAAGC ATTTCTTTTATATGTTGAAAGAATAAGAGGAAATGGGAGGGGTAGTTTATCTATTTCCCTGCTTCAGAGCTAGCATTATG CACTGTCTTCTAATAACTCTGCATATAGGTGGTAGACCTTTATGTGCCAAAACTTCTACTAGCGCTGTAAATAAAAGTAT AAAACATAGAAGTGTAATCTAGGTATTATTGATTATATTTTTATGCTTGGAACATACTCTTAATCATACAGATAAGTTCT CCATAGCATTATATTCTTTTTGTTTAAGAATTCCATCCCATTTCATATCAAGTAGAATATTTAAAATTTTAATGGGACTT TTTAAATTATTCCATGCTACCATGTCTGCTCCTTTAGTCATATTTCTAAAAAAGTTGAAGACTATTTAAGCATGTGGTAA TTTTGTTTGTGCAGCCCAGGACAGGAGAGAAATGTTAGAGGAGATTATGCGTAGAGGTTCAAGGGCGCTTGGGAATGATG TGCCCAGTGAGAGAGAAATTAACCGGCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAG AGAAGGCAAGAGGAAAATTACAGATCTCGTCTGATGGAAGAGCATGAATTGCCAGATTGGGTGTATTCTCCACTTAATAA GGATGATAAGGCCAAAGAGTTCAACGCTAGTGTTACTGGAAAGCGGAAAAGGAAAGAAGTGGTATATGCAGACACATTGA GTGATCTACAATGGATGAAGGCTGTGGAGAATGGGGAAGACATGGCAAGGCTTTCAGGTAGAGGGAAAAGAAGAGACCGC GTCTCATCTGACAGCATTGCACAAGCCAGTGATAATGCGGTGGCGGAAGAAAGTTTACTATATAGAGCTGAAAGTGCTTC CATGGCAAGCGAAAGAACAAGTGAAGAAGATAGTTTCCATGTGACCCCTGCCTCAAAGAGATTCAAGCCTGAAGGAACAA ATTTCCAGAGACATGCGTACGAGGATGTCAGAGGAAGTGGTTTAAACCAGCATCTGTTATCCTGGAATACTCACAGGAAG AAGAGATCAAACTTTCCTGGG
CDS sequence (LotjaGi5g1v0316700.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGATTGCGCCGTCCACTGTATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATCAGTTAAAAAAGAAACG GGATGTTGAGAGACTGTCAAGATTAGAAGAGGTGGAGAAAAACCATATAGAAACTAGAAAAAGGAAATTTTTTGCAGAAG TACTTGATACTGTCCGTGATTTCCAATTACAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGATGGCATCCAG GCATGGCATGGAAGGCAAAGACAACGAGCAACCCGAGCAGAGAAATTGAGATTCCAAGCCTTGAAGTCTGACGATCAAGA AGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTACGCTTCTTGAAGAAACAAATAAACTACTTGTAA ATTTAGGAGCAGCTGTTCAACGTCAAAAGGACAACAAACATTTAGATGGTATTGAACCCTTGGAAGAGTCCGAAGCTGAT TTGCCTGAGTCAGATGCTTCAAAGAATGGGGTTTCTAAGGAATCACCTCTAGATGAAGAGATAGATTCTGATCATAATGG TGATTCTAGAGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACACTCGATTCAGGAAAAAATCACTGAGCAAC CGTCTATACTTCAAGGTGGGGAATTAAGACAATACCAGATAGAGGGGCTCCAATGGATGATTTCTTTGTTTAATAACAAC TTAAATGGAATTTTGGCTGATGAAATGGGACTTGGGAAGACAATACAAACAATTTCGCTTATAGCACATCTTCTGGAATA CAAGGGTGTAACTGGTCCACACTTGATTGTTGCTCCAAAGGCTGTTCTGCCAAATTGGATGAGTGAATTCTCAACATGGG TTCCTAGCATTACTACTGTTCTTTACGATGGAAGGCTGGAAGAAAGGAAAGCAATGAAGGAAGAATTGTCAGGAGAGGGG AAATTTAATGTTCTTATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCATTGGCGCTACTT GATTGTGGATGAAGGGCACCGATTGAAGAATCATGAGTCTGCTCTAGCAAGAACCTTGGACTCTGGCTATCACATTCAAC GAAGACTTCTTTTGACTGGTACCCCAATTCAGAACAATTTGCAGGAATTGTGGTCCCTGCTTAATTTTCTCCTTCCTAAC ATTTTCAACTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTCTCTTTAACAGATGA AGAACAGCTATTGATCATCCGGCGTCTGCATCAAGTGATAAGGCCCTTCATCTTAAGAAGGAAAAAGGACGAGGTAGAAA AATGTCTTCCTGAGAAATCTCAGGTCATACTCAAATGTGATATGTCCGCCTGGCAGAAAGTATATTATCAACAAGTTACT GATGTAGGCAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTAACAATGCAACTCAGAAAGTG TTGCAACCATCCCTACCTCTTTGTGGGAGATTATGATATGTATAAACGTAAGGAGATTGTCAGAGCATCGGGTAAGTTTG AACTTCTAGACCGTTTGCTACCAAAACTTCGCAGAGCTGGACACAGAGTCCTCCTTTTCTCACAAATGACTCGACTCATG GACGTTCTTGAAATTTATTTGCGACTTCATGATTTCAAGTATCTTAGACTTGATGGCTCAACAAAAACAGAGGAAAGAGG CACTCTGCTAAAGAAATTCAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTGAGCACCCGTGCGGGGGGTCTTGGTT TGAACTTGCAAACAGCAGATACTGTTATAATTTTTGACAGTGATTGGAACCCGCAAATGGATCAACAAGCAGAGGACCGA GCACATCGCATTGGACAAAAGAAGGAAGTTAGGGTTTTTGTCTTGGTTAGTGTGGGATCAATAGAAGAGGTGATTTTAGA GCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATTCAGGCAGGACTTTTCAACACTACTTCAACAGCCCAGGACA GGAGAGAAATGTTAGAGGAGATTATGCGTAGAGGTTCAAGGGCGCTTGGGAATGATGTGCCCAGTGAGAGAGAAATTAAC CGGCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGGCAAGAGGAAAATTACAG ATCTCGTCTGATGGAAGAGCATGAATTGCCAGATTGGGTGTATTCTCCACTTAATAAGGATGATAAGGCCAAAGAGTTCA ACGCTAGTGTTACTGGAAAGCGGAAAAGGAAAGAAGTGGTATATGCAGACACATTGAGTGATCTACAATGGATGAAGGCT GTGGAGAATGGGGAAGACATGGCAAGGCTTTCAGGTAGAGGGAAAAGAAGAGACCGCGTCTCATCTGACAGCATTGCACA AGCCAGTGATAATAAGCGAAAGAACAAGTGA
Protein sequence (LotjaGi5g1v0316700.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMRLRRPLYGVGDPFAMDADDQLKKKRDVERLSRLEEVEKNHIETRKRKFFAEVLDTVRDFQLQIQASLKRRKQRNDGIQ AWHGRQRQRATRAEKLRFQALKSDDQEAYMRMVKESKNERLTTLLEETNKLLVNLGAAVQRQKDNKHLDGIEPLEESEAD LPESDASKNGVSKESPLDEEIDSDHNGDSRDLLEGQRQYNSAIHSIQEKITEQPSILQGGELRQYQIEGLQWMISLFNNN LNGILADEMGLGKTIQTISLIAHLLEYKGVTGPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKEELSGEG KFNVLITHYDLIMRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLLPN IFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKCLPEKSQVILKCDMSAWQKVYYQQVT DVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKRKEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLM DVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDR AHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSRALGNDVPSEREIN RLAARSDEEFWLFEKMDEERRQEENYRSRLMEEHELPDWVYSPLNKDDKAKEFNASVTGKRKRKEVVYADTLSDLQWMKA VENGEDMARLSGRGKRRDRVSSDSIAQASDNKRKNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 25 | 820 | 796 | 0.0 | – | |
| PANTHER | 25 | 820 | 796 | 0.0 | – | |
| MobiDBLite | 155 | 192 | 38 | - | – | |
| MobiDBLite | 172 | 192 | 21 | - | – | |
| Gene3D | 191 | 446 | 256 | 1.4E-75 | ||
| SUPERFAMILY | 198 | 447 | 250 | 6.17E-64 | ||
| SMART | 218 | 411 | 194 | 1.2E-37 | ||
| CDD | 219 | 449 | 231 | 4.20207E-129 | – | |
| ProSiteProfiles | 234 | 400 | 167 | 25.36 | ||
| Pfam | 236 | 513 | 278 | 5.2E-70 | ||
| SUPERFAMILY | 449 | 700 | 252 | 7.81E-68 | ||
| Gene3D | 453 | 752 | 300 | 2.5E-101 | – | |
| CDD | 524 | 656 | 133 | 1.01878E-58 | – | |
| Pfam | 532 | 645 | 114 | 5.5E-20 | ||
| ProSiteProfiles | 535 | 702 | 168 | 17.535 | ||
| SMART | 561 | 645 | 85 | 2.0E-25 | ||
| Pfam | 725 | 798 | 74 | 4.1E-11 | ||
| Coils | 733 | 753 | 21 | - | – | |
| SMART | 738 | 798 | 61 | 1.4E-20 | ||
| MobiDBLite | 806 | 836 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | Histone binding | Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity. |
Expression pattern of LotjaGi5g1v0316700.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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