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LotjaGi5g1v0316700.3

Overview

Field Value
Gene ID LotjaGi5g1v0316700
Transcript ID LotjaGi5g1v0316700.3
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description DNA/RNA helicase protein; TAIR: AT3G06010.1 SNF2/Brahma-type chromatin-remodeling protein CHR12; Swiss-Prot: sp|F4J9M5|CHR12_ARATH Probable ATP-dependent DNA helicase CHR12; TrEMBL-Plants: tr|A0A0R0I5I9|A0A0R0I5I9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0316700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:63438345..63444589) extracted from Lotus japonicus Gifu genome v1.2.

TCAAAGGTTCGATCTGATGTGAGTGCTGAAAACTGGCTAAATGTTAAATGTGCATATCCTGACAGGCAATTGTTTGACTG GGGCATGATGAGATTGCGCCGTCCACTGTATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATCAGTTAAAAAAGA AACGGGATGTTGAGGTGACTTTTTTATTTTTCAGCTAGCCCCCCAACAATTTGTTATGGGTTTGAAGTTTCCTTCCACCT TGGATAACATAAATTGTAGTAGTCCAAGGTGGAAGGTAAATTACTAAACAATTTGTAAACTAAACAAGGCATATAGTGTG ATGGTCCAGTTTCATTTTTCTGATATATGCATGAATTTTCTAGTATCTGAATGGGGAATTAATTTACACCATACTGCTTA TCTCATATATATCCTTAAATGCAGAGACTGTCAAGATTAGAAGAGGTGGAGAAAAACCATATAGAAACTAGAAAAAGGAA ATTTTTTGCAGAAGTACTTGATACTGTCCGTGATTTCCAATTACAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGA ATGATGGCATCCAGGTACACTATTCCCCATTCATTTGTTATAAATCATTTATATTAATTCGGAGATATGTATGTATATCT ATATATATATATATATATATATTTTGATGTATGTAGGTGTACTGTAACTTTTGGCCCATTAGAATTACAAGTTTATGTGT CCTCTTCATATGATAATTAGGCATGTTAGGTGTATGCATGGACTTGAAGAGCTTTTTTGTTTCTAACTTTAACTTTTGTG AAATTTGATTTATGTGCCAGTTGCATGTTTGATTTAGATCTCTATCTCTTCCTTAATTTCTCCTAAATTGTTATATTTTC TTTTTGTGCTTCAATTCTAGACCAAAAAAAGATATTAAAGCTTTGTTGAAATTCTGATTCTATATCAGGGAGCTTGGACC TAACCTGTTAGAATTTATTGAGGTAGTTCCATAGTGGTCAAATAAAGGTCAATGGTATTCTCTTCTAAATAATAAGTTTT TAGTGTTAAACTACATTTCAATATATGTGTGATAAAACATAAAACATGTGATGAAAGAAAAGGTAAAGAGAGATCAAAGG GGAAACAAGGTGCATAGGGGAACATTCAAGGCAAGTTATGATACAGAAATGATGATACTTGTTTAAATTCCAAAATGCTA GTGATTAGTTTGTTAGAAGTACTTTAGAGGAAAAAGTTTCACAATTGTAAATAGAAAGAGGTAACTGATGGTTCCAGAAG TCAATTACTAGAATTGCCTCAGTATTTAAAATTTTGCAGAGAATGACTGTTTTTTCATTAATATAGTGCGTGTGTGCGTG ACCATGTGTCAATTGCCCATGCTTTTATTGGTTTGGTTACATGATGAAGCTCTTACTCCTGATGAGAATTTTGTTTATTT GTAAAAATGTTAAAGAAATTCTGAACTTGATTCTGTCTTTTTCATTTCCTGGATAGATGAGACTTTTTATGACATGTTTG CTCTTCATCAACTAGAGATATAGTCAAAGTAGCCCTTATAAAGGCTTTGAGTCTTTGGCAAATGACAATCATCACCTTAC AAAGCTAGCTTTTGGGCTGAGTTTGGCCTAACCCAAATTATAAGAATAAGGATTATGAATGATTATAATTAATTTTGCAG GCATGGCATGGAAGGCAAAGACAACGAGCAACCCGAGCAGAGAAATTGAGATTCCAAGCCTTGAAGTCTGACGATCAAGA AGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTACGCTTCTTGAAGAAACAAATAAACTACTTGTAA ATTTAGGAGCAGCTGTTCAACGTCAAAAGGACAACAAACATTTAGATGGTATTGAACCCTTGGAAGAGTCCGAAGCTGAT TTGCCTGAGTCAGATGCTTCAAAGAATGGGGTTTCTAAGGAATCACCTCTAGATGAAGAGATAGATTCTGATCATAATGG TGATTCTAGAGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACACTCGATTCAGGAAAAAGTAAGTCTCTGCA ATTCACTTCATTTCACTTCTTGGACGAAAAATGCAACGAATTTTTTCTATGAAATCTGTGGGTTTTGTTGAATTTATTCC TTATTGGTTATTAGACATTTACCATAACAGTTGATTTAGGATAATATTATATGTTTGGCTTCTATTTGTGTAAAACACAT GAGGGATTGACGGCCTTGCTCCATTGATATTTTCTATTTTCTTGTTGTTTTGCTTATATTTTAATCTATGAGTTCTTTTG TCAAGGAAAACCAAATTAATCATTCCTTATTAGTTGTTTCTGGAATAAAAGGTTCAATACACTGGAAATATAACAATCTT AATCATTTACAGATCACTGAGCAACCGTCTATACTTCAAGGTGGGGAATTAAGACAATACCAGATAGAGGGGCTCCAATG GATGATTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGACTTGGGAAGACAATACAAACAATTT CGCTTATAGCACATCTTCTGGAATACAAGGGTGTAACTGGTCCACACTTGATTGTTGCTCCAAAGGCTGTTCTGCCAAAT TGGATGAGTGAATTCTCAACATGGGTTCCTAGGTATGTCCTGGGAAGACATTGTATATTATTTCCTCTTTTGCTTCCCTT GTGGGGAGAAGGAATAGTATTCTATCTCTGAATTATGTGCATCCCATCAAATCACGTGTGCCCTTTCTTTCTGATTCAGC ATTACTACTGTTCTTTACGATGGAAGGCTGGAAGAAAGGAAAGCAATGAAGGAAGAATTGTCAGGAGAGGGGAAATTTAA TGTTCTTATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCATTGGCGCTACTTGATTGTGG ATGAAGGGCACCGATTGAAGAATCATGAGTCTGCTCTAGCAAGAACCTTGGACTCTGGGTATGATTCTACATGAGCAATA TTGATGACACTTATTAATACATTTACTTCCCTAGATTCTTGGTTGTATATATTTCTATTTTATATAGAAAAATGCTAAAC AGCTTAAGTCGCATGGATGATACGACACACGACAAGAGTAACACATAAAATTAGTATAAAATCAATAGAGAAAACAAATA TTAAATCAAAAGAGAGAATCAATGTTCTAAATGTCATCATGCGTCATTTAATCATTTTAGACATAATAAATTGCTATTAT TTACTCTAATTATTGTGCTATTTCCATTTATATCAGTATACGGCTACAACACAACAAGGCTAGTGATTTAAGTGTCCTTC CTTGCTTGCTGGCAGCTATATTTAACTAATGCAAAATAGATACGATGAAAGGAAAGAGGGATAGCTTTCAAAACCATGCA TTACTTAGTTAAAGCATCCTGCAATCAAACAATTCATTACCTGACAGTGGTACTACCAGTCAGGTGGTTTAGTGCCTCTT CTCTAATTTTTGAATTTCATTTGTGTGCAGCTATCACATTCAACGAAGACTTCTTTTGACTGGTACCCCAATTCAGAACA ATTTGCAGGAATTGTGGTCCCTGCTTAATTTTCTCCTTCCTAACATTTTCAACTCAGTTCAGAATTTCGAGGACTGGTTT AATGCTCCCTTTGCAGACCGAGTTGATGTCTCTTTAACAGATGAAGAACAGCTATTGATCATCCGGCGTCTGCATCAAGT GTGTTTCTCTCTTCTAACTTCTAATTCTCTAGCTCTTTTCAACTTCTTTCTGATGTTTTCCATTCATTCCTTAGGTGATA AGGCCCTTCATCTTAAGAAGGAAAAAGGACGAGGTAGAAAAATGTCTTCCTGAGAAATCTCAGGTCATACTCAAATGTGA TATGTCCGCCTGGCAGAAAGTATATTATCAACAAGTTACTGATGTAGGCAGAGTTGGCTTAGACAATGGTCTGTATCTAT TTTTCATTTTCCATTTATCCCTTAACCCACTTCTCCTTTCAAGTTTCAAATTCGTAAAAATTGCAAATCTCTTCCCATAT ACTTTGGTTTTGAATATTTGGTATGCTAAAGTTATTCATTTTTTCCCAACTCCACTGATATAGCCTGTGAATTTCATTGT ATTTTCAATATGCTTATTAATCAGTTTAGCCTGTCTTTTAGGAAGTAAGCCACGAGCCTATTTTCCCTTCAGTTGTAATT ATTCCTTATTAGTGTGTTTTACCTGTTGTAACTTTGTTAAGAATTGGTGACATATGTTTATTTCTTAGCTCAACATAAAT GTGGGTTGCAAACTTGCAATCACCTGTTGTTGAGATCTTGTAGTTTTCTTTTATAAAAAAAAAGCACTATTTCCCAGATT TCTCAAAACTTGCGTTGCAAGCTTATTCTGACTTATGGATCAATTTGTAGGTTCTGGAAAATCAAAAAGTCTACAGAACT TAACAATGCAACTCAGAAAGTGTTGCAACCATCCCTACCTCTTTGTGGGAGATTATGATATGTATAAACGTAAGGAGATT GTCAGAGCATCGGGTAAGTTTGAACTTCTAGACCGTTTGCTACCAAAACTTCGCAGAGCTGGACACAGAGTCCTCCTTTT CTCACAAATGACTCGACTCATGGACGTTCTTGAAATTTATTTGCGACTTCATGATTTCAAGTATCTTAGACTTGATGGCT CAACAAAAACAGAGGAAAGAGGCACTCTGCTAAAGAAATTCAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTGAGC ACCCGTGCGGGGGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATTTTTGACAGTGATTGGAACCCGCAAAT GGATCAACAAGCAGAGGACCGAGCACATCGCATTGGACAAAAGAAGGAAGTTAGGGTTTTTGTCTTGGTTAGTGTGGGAT CAATAGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATTCAGGCAGGACTTTTCAAC ACTACTTCAACAGGTTTGTAGTCTTGATACTAGTACTATGTCCTGGCAATATTTGTTGTTATGTTTTGGCAAATGTCTGA AAGCATTTCTTTTATATGTTGAAAGAATAAGAGGAAATGGGAGGGGTAGTTTATCTATTTCCCTGCTTCAGAGCTAGCAT TATGCACTGTCTTCTAATAACTCTGCATATAGGTGGTAGACCTTTATGTGCCAAAACTTCTACTAGCGCTGTAAATAAAA GTATAAAACATAGAAGTGTAATCTAGGTATTATTGATTATATTTTTATGCTTGGAACATACTCTTAATCATACAGATAAG TTCTCCATAGCATTATATTCTTTTTGTTTAAGAATTCCATCCCATTTCATATCAAGTAGAATATTTAAAATTTTAATGGG ACTTTTTAAATTATTCCATGCTACCATGTCTGCTCCTTTAGTCATATTTCTAAAAAAGTTGAAGACTATTTAAGCATGTG GTAATTTTGTTTGTGCAGCCCAGGACAGGAGAGAAATGTTAGAGGAGATTATGCGTAGAGGTTCAAGGGCGCTTGGGAAT GATGTGCCCAGTGAGAGAGAAATTAACCGGCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGA AGAGAGAAGGCAAGAGGAAAATTACAGATCTCGTCTGATGGAAGAGCATGAATTGCCAGATTGGGTGTATTCTCCACTTA ATAAGGATGATAAGGCCAAAGAGTTCAACGCTAGTGTTACTGGAAAGCGGAAAAGGAAAGAAGTGGTATATGCAGACACA TTGAGTGATCTACAATGGATGAAGGCTGTGGAGAATGGGGAAGACATGGCAAGGCTTTCAGGTAGAGGGAAAAGAAGAGA CCGCGTCTCATCTGACAGCATTGCACAAGCCAGTGATAATGCGGTGGCGGAAGAAAGTTTACTATATAGAGCTGAAAGTG CTTCCATGGCAAGCGAAAGAACAAGTGAAGAAGATAGTTTCCATGTGACCCCTGCCTCAAAGAGATTCAAGCCTGAAGGA ACAAATTTCCAGAGACATGCGTACGAGGATGTCAGAGGAAGTGGTTTAAACCAGCATCTGTTATCCTGGAATACTCACAG GAAGAAGAGATCAAACTTTCCTGGGCCGGGTTCATCATCCGATTCTAGAGGGCAAAGTTCAAACGGAAAAGCAAACTGGA ACTGA 

CDS sequence (LotjaGi5g1v0316700.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGAGATTGCGCCGTCCACTGTATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATCAGTTAAAAAAGAAACG GGATGTTGAGAGACTGTCAAGATTAGAAGAGGTGGAGAAAAACCATATAGAAACTAGAAAAAGGAAATTTTTTGCAGAAG TACTTGATACTGTCCGTGATTTCCAATTACAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGATGGCATCCAG GCATGGCATGGAAGGCAAAGACAACGAGCAACCCGAGCAGAGAAATTGAGATTCCAAGCCTTGAAGTCTGACGATCAAGA AGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTACGCTTCTTGAAGAAACAAATAAACTACTTGTAA ATTTAGGAGCAGCTGTTCAACGTCAAAAGGACAACAAACATTTAGATGGTATTGAACCCTTGGAAGAGTCCGAAGCTGAT TTGCCTGAGTCAGATGCTTCAAAGAATGGGGTTTCTAAGGAATCACCTCTAGATGAAGAGATAGATTCTGATCATAATGG TGATTCTAGAGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACACTCGATTCAGGAAAAAATCACTGAGCAAC CGTCTATACTTCAAGGTGGGGAATTAAGACAATACCAGATAGAGGGGCTCCAATGGATGATTTCTTTGTTTAATAACAAC TTAAATGGAATTTTGGCTGATGAAATGGGACTTGGGAAGACAATACAAACAATTTCGCTTATAGCACATCTTCTGGAATA CAAGGGTGTAACTGGTCCACACTTGATTGTTGCTCCAAAGGCTGTTCTGCCAAATTGGATGAGTGAATTCTCAACATGGG TTCCTAGCATTACTACTGTTCTTTACGATGGAAGGCTGGAAGAAAGGAAAGCAATGAAGGAAGAATTGTCAGGAGAGGGG AAATTTAATGTTCTTATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCATTGGCGCTACTT GATTGTGGATGAAGGGCACCGATTGAAGAATCATGAGTCTGCTCTAGCAAGAACCTTGGACTCTGGCTATCACATTCAAC GAAGACTTCTTTTGACTGGTACCCCAATTCAGAACAATTTGCAGGAATTGTGGTCCCTGCTTAATTTTCTCCTTCCTAAC ATTTTCAACTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTCTCTTTAACAGATGA AGAACAGCTATTGATCATCCGGCGTCTGCATCAAGTGATAAGGCCCTTCATCTTAAGAAGGAAAAAGGACGAGGTAGAAA AATGTCTTCCTGAGAAATCTCAGGTCATACTCAAATGTGATATGTCCGCCTGGCAGAAAGTATATTATCAACAAGTTACT GATGTAGGCAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTAACAATGCAACTCAGAAAGTG TTGCAACCATCCCTACCTCTTTGTGGGAGATTATGATATGTATAAACGTAAGGAGATTGTCAGAGCATCGGGTAAGTTTG AACTTCTAGACCGTTTGCTACCAAAACTTCGCAGAGCTGGACACAGAGTCCTCCTTTTCTCACAAATGACTCGACTCATG GACGTTCTTGAAATTTATTTGCGACTTCATGATTTCAAGTATCTTAGACTTGATGGCTCAACAAAAACAGAGGAAAGAGG CACTCTGCTAAAGAAATTCAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTGAGCACCCGTGCGGGGGGTCTTGGTT TGAACTTGCAAACAGCAGATACTGTTATAATTTTTGACAGTGATTGGAACCCGCAAATGGATCAACAAGCAGAGGACCGA GCACATCGCATTGGACAAAAGAAGGAAGTTAGGGTTTTTGTCTTGGTTAGTGTGGGATCAATAGAAGAGGTGATTTTAGA GCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATTCAGGCAGGACTTTTCAACACTACTTCAACAGCCCAGGACA GGAGAGAAATGTTAGAGGAGATTATGCGTAGAGGTTCAAGGGCGCTTGGGAATGATGTGCCCAGTGAGAGAGAAATTAAC CGGCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGGCAAGAGGAAAATTACAG ATCTCGTCTGATGGAAGAGCATGAATTGCCAGATTGGGTGTATTCTCCACTTAATAAGGATGATAAGGCCAAAGAGTTCA ACGCTAGTGTTACTGGAAAGCGGAAAAGGAAAGAAGTGGTATATGCAGACACATTGAGTGATCTACAATGGATGAAGGCT GTGGAGAATGGGGAAGACATGGCAAGGCTTTCAGGTAGAGGGAAAAGAAGAGACCGCGTCTCATCTGACAGCATTGCACA AGCCAGTGATAATGCGGTGGCGGAAGAAAGTTTACTATATAGAGCTGAAAGTGCTTCCATGGCAAGCGAAAGAACAAGTG AAGAAGATAGTTTCCATGTGACCCCTGCCTCAAAGAGATTCAAGCCTGAAGGAACAAATTTCCAGAGACATGCGTACGAG GATGTCAGAGGAAGTGGTTTAAACCAGCATCTGTTATCCTGGAATACTCACAGGAAGAAGAGATCAAACTTTCCTGGGCC GGGTTCATCATCCGATTCTAGAGGGCAAAGTTCAAACGGAAAAGCAAACTGGAACTGA 

Protein sequence (LotjaGi5g1v0316700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMRLRRPLYGVGDPFAMDADDQLKKKRDVERLSRLEEVEKNHIETRKRKFFAEVLDTVRDFQLQIQASLKRRKQRNDGIQ AWHGRQRQRATRAEKLRFQALKSDDQEAYMRMVKESKNERLTTLLEETNKLLVNLGAAVQRQKDNKHLDGIEPLEESEAD LPESDASKNGVSKESPLDEEIDSDHNGDSRDLLEGQRQYNSAIHSIQEKITEQPSILQGGELRQYQIEGLQWMISLFNNN LNGILADEMGLGKTIQTISLIAHLLEYKGVTGPHLIVAPKAVLPNWMSEFSTWVPSITTVLYDGRLEERKAMKEELSGEG KFNVLITHYDLIMRDKAFLKKIHWRYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNNLQELWSLLNFLLPN IFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKCLPEKSQVILKCDMSAWQKVYYQQVT DVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKRKEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLM DVLEIYLRLHDFKYLRLDGSTKTEERGTLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDR AHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSRALGNDVPSEREIN RLAARSDEEFWLFEKMDEERRQEENYRSRLMEEHELPDWVYSPLNKDDKAKEFNASVTGKRKRKEVVYADTLSDLQWMKA VENGEDMARLSGRGKRRDRVSSDSIAQASDNAVAEESLLYRAESASMASERTSEEDSFHVTPASKRFKPEGTNFQRHAYE DVRGSGLNQHLLSWNTHRKKRSNFPGPGSSSDSRGQSSNGKANWN 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 25 851 827 0.0
PANTHER 25 851 827 0.0
MobiDBLite 155 192 38 -
MobiDBLite 172 192 21 -
Gene3D 191 446 256 1.7E-75
SUPERFAMILY 198 447 250 7.92E-64
SMART 218 411 194 1.2E-37
CDD 219 449 231 1.04285E-128
ProSiteProfiles 234 400 167 25.36
Pfam 236 513 278 6.2E-70
SUPERFAMILY 449 700 252 1.04E-67
Gene3D 453 752 300 3.1E-101
CDD 524 656 133 5.89273E-59
Pfam 532 645 114 6.4E-20
ProSiteProfiles 535 702 168 17.535
SMART 561 645 85 2.0E-25
Pfam 725 798 74 4.7E-11
Coils 733 753 21 -
SMART 738 798 61 1.4E-20
MobiDBLite 809 823 15 -
MobiDBLite 809 828 20 -
MobiDBLite 845 872 28 -
MobiDBLite 848 863 16 -
MobiDBLite 896 925 30 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Molecular function Histone binding Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0316700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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