Domain Predictions — View

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cd18008

Source: CDD

Description

DEXDc_SHPRH-like

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 13

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi3g1v0111300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein; TAIR: AT3G54460.1 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein; Swiss-Prot: sp\|Q9M1I1\|FB304_ARATH F-box protein At3g54460; TrEMBL-Plants: tr\|A0A0B2QMB3\|A0A0B2QMB3_GLYSO F-box protein; Found in the gene: LotjaGi3g1v0111300	Domains G3DSA:1.20.1280.50 G3DSA:3.30.40.100 G3DSA:3.40.50.10810 IPR000330 IPR001810 IPR011124 IPR014001 IPR017907 IPR027417 IPR036047 IPR038718 PF00176 PF00646 PF07496 PS00518 PS50181 PS51050 PS51192 PTHR45626 PTHR45626:SF14 SM00256 SM00487 SSF52540 SSF81383 cd18008 cd18071 mobidb-lite	27
LotjaGi3g1v0111300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein; TAIR: AT3G54460.1 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein; Swiss-Prot: sp\|Q9M1I1\|FB304_ARATH F-box protein At3g54460; TrEMBL-Plants: tr\|A0A0B2QMB3\|A0A0B2QMB3_GLYSO F-box protein; Found in the gene: LotjaGi3g1v0111300	Domains G3DSA:1.20.1280.50 G3DSA:3.30.40.100 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001650 IPR001810 IPR011124 IPR014001 IPR017907 IPR027417 IPR036047 IPR038718 PF00176 PF00271 PF00646 PF07496 PS00518 PS50181 PS51050 PS51192 PS51194 PTHR45626 PTHR45626:SF14 SM00256 SM00487 SM00490 SSF52540 SSF81383 cd18008 cd18071 cd18793 mobidb-lite	33
LotjaGi3g1v0172500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase; TAIR: AT5G22750.1 DNA/RNA helicase protein; Swiss-Prot: sp\|Q9FNI6\|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; TrEMBL-Plants: tr\|A0A072VAY9\|A0A072VAY9_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi3g1v0172500	Domains G3DSA:3.30.40.10 IPR000330 IPR001650 IPR001841 IPR013083 IPR014001 IPR014905 IPR017907 IPR027417 PF00176 PF00271 PF08797 PF13923 PS00518 PS50089 PS51192 PS51194 PTHR45626 PTHR45626:SF2 SM00184 SM00487 SM00490 SM00910 SSF52540 SSF57850 cd16449 cd18008 cd18793 mobidb-lite	29
LotjaGi3g1v0172500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase; TAIR: AT5G22750.1 DNA/RNA helicase protein; Swiss-Prot: sp\|Q9FNI6\|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; TrEMBL-Plants: tr\|A0A072VAY9\|A0A072VAY9_MEDTR DNA/RNA helicase; Found in the gene: LotjaGi3g1v0172500	Domains G3DSA:3.30.40.10 IPR000330 IPR001650 IPR001841 IPR013083 IPR014001 IPR014905 IPR017907 IPR027417 PF00176 PF00271 PF08797 PF13923 PS00518 PS50089 PS51192 PS51194 PTHR45626 PTHR45626:SF2 SM00184 SM00487 SM00490 SM00910 SSF52540 SSF57850 cd16449 cd18008 cd18793 mobidb-lite	29
LotjaGi3g1v0187500_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase; TAIR: AT1G05120.1 Helicase protein with RING/U-box domain-containing protein; Swiss-Prot: sp\|P31244\|RAD16_YEAST DNA repair protein RAD16; TrEMBL-Plants: tr\|A0A1J7HBU3\|A0A1J7HBU3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0187500_LC	Domains IPR000330 IPR014001 IPR027417 PF00176 PS51192 PTHR45626 PTHR45626:SF12 SM00487 SSF52540 cd18008 mobidb-lite	11
LotjaGi3g1v0467700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase; TAIR: AT1G05120.1 Helicase protein with RING/U-box domain-containing protein; Swiss-Prot: sp\|P79051\|RHP16_SCHPO ATP-dependent helicase rhp16; TrEMBL-Plants: tr\|A0A1J7HBU3\|A0A1J7HBU3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0467700	Domains Coil G3DSA:3.30.40.10 G3DSA:3.40.50.10810 IPR000330 IPR001650 IPR001841 IPR013083 IPR014001 IPR017907 IPR027417 IPR038718 PF00176 PF00271 PF13923 PS00518 PS50089 PS51192 PS51194 PTHR45626 PTHR45626:SF12 SM00184 SM00487 SM00490 SSF52540 SSF57850 cd18008 cd18793 mobidb-lite	28
LotjaGi3g1v0469700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase protein; TAIR: AT1G02670.4 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp\|P79051\|RHP16_SCHPO ATP-dependent helicase rhp16; TrEMBL-Plants: tr\|A0A151RMT2\|A0A151RMT2_CAJCA ATP-dependent helicase rhp16; Found in the gene: LotjaGi3g1v0469700	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.10810 IPR000330 IPR001841 IPR013083 IPR014001 IPR017907 IPR018957 IPR027417 IPR038718 PF00097 PF00176 PS00518 PS50089 PS51192 PTHR45626 PTHR45626:SF12 SM00184 SM00487 SSF52540 SSF57850 cd18008 mobidb-lite	23
LotjaGi4g1v0052100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SNF2 domain-containing protein / helicase domain-containing protein; TAIR: AT1G61140.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp\|Q94BR5\|CHR28_ARATH Helicase-like transcription factor CHR28; TrEMBL-Plants: tr\|A0A1J7HC54\|A0A1J7HC54_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0052100	Domains G3DSA:3.30.40.10 IPR000330 IPR001650 IPR001841 IPR013083 IPR014001 IPR017907 IPR027417 PF00176 PF00271 PF13920 PS00518 PS50089 PS51192 PS51194 PTHR45626 PTHR45626:SF24 SM00184 SM00487 SM00490 SSF52540 SSF57850 cd18008 cd18793 mobidb-lite	25
LotjaGi5g1v0354400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; TAIR: AT1G50410.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp\|Q94BR5\|CHR28_ARATH Helicase-like transcription factor CHR28; TrEMBL-Plants: tr\|A0A1J7GA61\|A0A1J7GA61_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0354400	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.10810 IPR000330 IPR001650 IPR001841 IPR013083 IPR014001 IPR017907 IPR018957 IPR027417 IPR038718 PF00097 PF00176 PF00271 PS00518 PS50089 PS51192 PS51194 PTHR45626 PTHR45626:SF24 SM00184 SM00487 SM00490 SSF52540 SSF57850 cd18008 cd18793 mobidb-lite	28
LotjaGi5g1v0354400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; TAIR: AT1G50410.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp\|Q94BR5\|CHR28_ARATH Helicase-like transcription factor CHR28; TrEMBL-Plants: tr\|A0A1J7GA61\|A0A1J7GA61_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0354400	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.10810 IPR000330 IPR001650 IPR001841 IPR013083 IPR014001 IPR017907 IPR018957 IPR027417 IPR038718 PF00097 PF00176 PF00271 PS00518 PS50089 PS51192 PS51194 PTHR45626 PTHR45626:SF24 SM00184 SM00487 SM00490 SSF52540 SSF57850 cd18008 cd18793 mobidb-lite	28
LotjaGi5g1v0354400.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; TAIR: AT1G50410.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp\|Q94BR5\|CHR28_ARATH Helicase-like transcription factor CHR28; TrEMBL-Plants: tr\|K7N2N9\|K7N2N9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0354400	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.10810 IPR000330 IPR001650 IPR001841 IPR013083 IPR014001 IPR017907 IPR018957 IPR027417 IPR038718 PF00097 PF00176 PF00271 PS00518 PS50089 PS51192 PS51194 PTHR45626 PTHR45626:SF24 SM00184 SM00487 SM00490 SSF52540 SSF57850 cd18008 cd18793 mobidb-lite	28
LotjaGi6g1v0006600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA/RNA helicase protein; TAIR: AT5G43530.1 Helicase protein with RING/U-box domain-containing protein; Swiss-Prot: sp\|Q9FIY7\|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3; TrEMBL-Plants: tr\|A0A072VHP2\|A0A072VHP2_MEDTR DNA repair helicase rad5,16, putative; Found in the gene: LotjaGi6g1v0006600	Domains Coil G3DSA:3.30.40.10 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR001650 IPR001841 IPR013083 IPR014001 IPR014905 IPR017907 IPR027417 IPR038718 PF00176 PF00271 PF08797 PF13920 PS00518 PS50089 PS51192 PS51194 PTHR45626 PTHR45626:SF2 SM00184 SM00487 SM00490 SM00910 SSF52540 SSF57850 cd18008 cd18793 mobidb-lite	32
LotjaGi6g1v0336200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	SNF2 domain-containing protein / helicase domain-containing protein; TAIR: AT1G61140.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein; Swiss-Prot: sp\|Q94BR5\|CHR28_ARATH Helicase-like transcription factor CHR28; TrEMBL-Plants: tr\|K7MA23\|K7MA23_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0336200	Domains G3DSA:3.30.40.10 G3DSA:3.40.50.10810 IPR000330 IPR001650 IPR001841 IPR013083 IPR014001 IPR017907 IPR018957 IPR027417 IPR038718 PF00097 PF00176 PF00271 PS00518 PS50089 PS51192 PS51194 PTHR45626 PTHR45626:SF24 SM00184 SM00487 SM00490 SSF52540 SSF57850 cd18008 cd18793 mobidb-lite	28

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	7.69