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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0469700 |
| Transcript ID | LotjaGi3g1v0469700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA/RNA helicase protein; TAIR: AT1G02670.4 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|P79051|RHP16_SCHPO ATP-dependent helicase rhp16; TrEMBL-Plants: tr|A0A151RMT2|A0A151RMT2_CAJCA ATP-dependent helicase rhp16; Found in the gene: LotjaGi3g1v0469700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88508315..88515468) extracted from Lotus japonicus Gifu genome v1.2.
CTCAGTTCCCGCCATTTCTTGATCTTCGAAACCCTGCTCCAATCCGAAACCCTAACTCTCTCTCTCTCTCTCTGTTCCTC TCTGCGTTCATCAATGGAGGTTCCTCCTCGTGGGTGCTTTCTTTCTTTCATTCATTTCTCTTTCGATTTCTTTCTTTCTT TCTCGCATTTCCTTTCGGTTAACGCAGAATCTCTGTGTCCGTGAACGATTTGAAAACCCTGAATTGTGTTCTTGCAAACA GCGAATGATGACCAAAATCGACGAAGAGGGAGAAAGAAGATACCCAAGCCACTGTTGCTATGGCAACAGTGGGAAAGCGA GGACCGGAAATTCGTTGAAGAGAAGATGCGAGAAGAAGAACAAGATTCCGCCGGTAATGGGAAAGAAGAATTGACGGTGG AAACCGCCGAGCCTTCCTCTGATCTCACCGTACCTCTACTCAGGTACCAGAAGGAATGGCTAGCGTGGGGTTTGAATCAA GAAAATTCTCCTGTTAGAGGTGGAATTCTCGCAGATGAAATGGGGATGGGGAAGACTATTCAAGCAATTGCCCTTGTTCT TGCCAAACGTCAAGAATTGCGACAAACGGGTCGCGAAATTGAAGACGAATGGGTACCTTCAACCTCAGGTTCTTTTGCTA CATGGTTGCCTGCGATCAAAGGAACGCTTGTTGTTTGTCCCCCGGTCGCTGTCTCTCAATGGGTCAACGAAATTGATCGC TTTACTGTCAAAGGAAGCACCAAGGTGCTGGTCTATCATGGAGCTAACAGAGTGAAGAGCCGCGACCAGTTCTCGGAGTT TGATTTTGTTATAACTACTTACTCTATTGTTCAGTCTCAGTACAAGAAGGCCATGAGTGAATGTCTCTGTTGTGGAAACA TGTTTTTGGAGCCTAATTCTCGTCAAGACCATGTTTGTAGGCCTCATGTTAGAGCTGAAAATCCACCACTTCTACATGCT GTAATGTGGCAGCGGATCATATTGGATGAGGTCAGGACACTGTTTTACTATTGCTAGTAGTACTTATACTTTGAGAAAAA TGAAGAAAGGATCAATGGATTATATAGCTCAAACTAGGTATTTCATAACTTAAATTCTCATACTGATTTCTGTTTTATTC AAGGCATTGGTTTGTGGCTTGTGAATTCTCATATCTATTTCATTGACCATGGATTATATAGCTCAAACTAAGTATTTGAT AACTTCAATTCTCATACTGATTTCTGTTTCATTGAAGGCGTTGGTTTATGGCTTGTGAGTTCTCATATCTATTTTATTCA TCATTTCTTCTTAATATGTTTTAAAAAATTAGGCGCACTATATAAAAGCTATACATGGCAGCACTACTAAAGCAGTTCTT GCTTTAGAGTCTTCCTACAAATGGGCATTAAGTGGCACTCCCCTTCAGAACAATGTCGGAGAGCTGTATTCTCTGGTAGG TTTGTCATGTTTTTTATTTTTTTATGTAAATCTGAAATATATCAGGTTTGTGTCTTGAAGATATTTTAATTGCAATTTCA TGTATGTAGGTGCGGTTCCTGCAAGTTACTCCTTATGCCTACTTATTGTGCAAGGACTGTGATTGTAAGATTCTTGAGAA GAAAAGGTATGATAATTGATTATAGTCAATGAGCTTGGTGGATTAGCAGTCATTACTTATTTGTCATGTATACAGACTTG ATATGTGAATTTATGACTTAGGGAGAGCTCAAGTATAAACTTGTTTGTTCTGTTTTTCCCTGTCTTGACTTGCTAAGAAA TGAATATAACAATGTCTCCTTTTCTCATAGTATTTCATGTTGATTAATGACCGCTTCAATGAATTAAGGTACATCCTATT TTCTTGTGAGTACCACTCATGGAGCAACTGCTATTTTCTTGAGAGAACATTTTCTTATACCTAAGAGATTTTGGAGTTTC AACACTATTTTTATATTTCTTGTTACTGATTTCATTTATCTTATTATTATGCTAATGTGTTGTTTGTGTATGACTGTATG TGTTACTGGGGGCGTATTTTCTGCCTGCTGTGCTCTTATTTTTAAGTTCTGTTTTATAAGTTTGTAAAAGGAAGTTCTTG GCATGGATGGGTTACAAGTAGCTAGTAGCATCCATTGAATATAGTGAGTGAGTGATCGGTTTAATATCCTACATGCGCAT GTCAATATACATGTTCATAATGCTTGATGTTCTTGAATTGTTAATTATGTGTTTGTTATCTTGATGTCTTTATACAGAAA TGAAAAATGTTCGAAATGCAGCCATGGTACTTCAAGGCATTTCTCTTGGTGGATTAAAGTAAGTTCTGCAGTTTATTAGT CTTTTTTGTCTTTACCATCTTAAATAAAAAGACAGAGAAGCCATATCTTCAATTTTCAGAAATTGTTTGAGCTGACATAT TGACTTGTTCTTTGTTGATTTTTTTTTTATCTTAGTACATTTCAAGAGAGCATTAAATGATGTTTTTCCAAGAAATGCCC TTACATAAACAATAAATGAGGAAAGATAAAAACACATTTTAAAGGGTGAAATAGGAAAACAAAGAATACATTTTAATTGC ACTCCTTAATGTGTGTTTCTTCTCTTCCTTGACAGTTAAATAGGAACAGAGGTAGTATGTTATTGGTTAAACACAAAATT TTGAAGAACATAATGCTAAGGCGCACTAAAATAGGCAGGGCTGCTGATCTTGCGTTTCCAGAAAAAATTGTAAGCTGTTC CCTATGTTATGTGGTTAAGTGCAATTTTTTTTAAACAGAAAGATATACATATATATATATATATATATATATATATATAT TTATTTATGATCTATATTTCTCCTCGCAGATTTCAGTGAGAAGAGTCTACCTGGACGTAAAGGAGCAAGACTATTACAAG TCAACATGTATTGAATGTCTGAAATCGGTTAATACGTATGTCACATTCTTTTCCTTATCATACAATAAAAATAGTGTAAG GCCTATTATTCATAAAACGTAATTTTCCTTTGACAACTAATAAAAAGCCTATAGGGATGGGATTCCAGGAGTTAATTACC AAGCTATTCATGAAATAATCCGGAAACAGAATTTAATTATCTTCAACAGTGCCTTTTTATTAACAACGGTAATCTGGTAG GTCAAAACTTTTAAGTCTTAAGACCAGCTGGATAATTGGAACAAACGTTGGATTTGTCTCCTACAATCGACTGAGATGAT GTTGTAATCTGTTGTATATCTCTTTTTTTGCGTATTTAAAACTTGTTGCTTTTGGCTACTGAAGGAAATTGTTCCCAGTG TTTCCTCATTTTCCTGGACACATCTTCAGAAAAAAAATGGATGGAACAGAGCGAAGTGAGAGCTATTTTTGCTACCTATA ACATTACTATTATTGCTTTATTTCCCTTTTCATTTGGTGGGTTTTCGCTTCTTTAACTGGCGCTGTTTGTTGTCTCAGTG CTCAGTTCCTCTTATATGAACGGTTGGGGGTTTTTGTTTTGTTTTCCCCATAGGAGACATTTTTGCCATGTCTCTGTAAT CTTTTTTACTGTTTTGGGCTGAAGTCCGTATACTTCTTATCAATATATTTGGCTTTCCCAAAAAAAAATCTTGCTCTAAT CAATTGGAGTTGAATTTCGGTAGGGAGGTCCATATCTTGCCCATGCATAATTCTAATAGTTGTGGACGGACATATCTTCA GTTTGGAAACAGATACATCATCCCTGGGTTGGCTGTATTGATATACTTTTTCCTTTACAGATATGTTGAAGCAAATATTG TGATGAATCATTATGCTGATATATTTGGTCTCCTCACGAAGCTGCGTCAGGTTTAATAAAAAAAAATTTATTATGCTTTT TTCATCTGTGATGCATATTTTATCCCTTCTTGTCTGGATGAATATTGATGAAGAATGATATACTTTATGATCATGGACAT GTTGGAAGTATTGTCCCTGCATGACAGTGTGAGAGAGAGATGTGACAGTTATTATAACAGAAATCTGGACCTATTGACCA GAATAGAAGTTAGTTTTAACTGCCTGTGTATATATATAGGGTAGTCTGGAAAAAAGAGGCATCACTTGTTTTGTATAGGT GTGTATGAGCCTCTTGAATTACTTAATATTCTTAGAATTTGTGTTGTTCTCTTTATTGACCTACATTTGGTTAGTTCTGA GTTGATTCTTCAATAACAAATTGATTCTTTCTCTAAGTTCTGTTTACCAGTTATATCAATGCATATTCTTGAAAATTTGA AATTCTTAAAAGTTCCAACATTTTAACTTCGACCATGTCTCAAATGATCTACAATAGCATTTAACATTAAAATCTTGCAC AGGAAACGCTTATATTACTACTACCATTAGTAAATTTTTGTACAAATGTCATGATGATAGACTAAAAGGCTATGTAATAT CAAATTATCAACAACAAAAACCTTACCCACTATATTGTTATCACGGATTCTTGAAAAAATATGATTATATACTCTTTTAT TTTTCGGTCCTTGTGTTCTATGTGGGTATAGCCGTATAGGTATTTGGAAGTTTCCCTTATTTACTATCTACAAGAATTAT AAAACTTTACAGGAGGCTATACACCTGTCAATCTCTCCTTTAATGTTTTCCCGCCCATTAATCTGTTAAGTACAATGACT ATTTTGAATTGGATGGTTTTTTGTTTTCTTTTCTTTGCAATGCACGACTGTGGTTAAGTTTGTTAAGAAAACTTTCAGAC TTACATTTGTCCTCCTGCCTAAATGCACAGGCTGTTGATCACCCATACCTTGTGGTATATTCTAAACCTGAAGCGTTAAA AGGGGCAGGTGTGGCAGCAAGTGATGGTACTGTTGAACAAGTATGTGGCATTTGTGATGAGCCAGTGGAAGACCCTGTAG TAAGTTTGTGTTTTCTTTTTTGAAAAAAAATTGTGTTGTTTTGTTTCATTTAACCTTTTTACCTAGTCTTTCTTATAGTG TATTTAGACCAATAATTATAGCTAATTTTATCATGTTAAGGACATCTAGTCATTGTTTCAGGTTACCTCTTGTGAGCATG TATTTTGTAATGCATGCCTAGTAGACTTCTCTGCTTCCATGGATCCAGTGCTATGCCCCTCATGCTCTCTACCAATAACT GTTGAGATAACTTCCAGCAAGGATGTCAGTGGCAAGTCTAATGATACAGCAATTAAGGGTTTCAGATCATCAAGCATCTT ATACAAAATTGAGCTTGAGAACTTTCAGACAAGCACTAAAATAGAGGCTTTGGTATGTATCACAAATTAGTTACATGAAA ACTGTTTTATGGCTTATTCATGGCTTTTAAAGGTCTGAATAGTTCATGGCTTATAATCCATGGTTTTCCTTTTTTTTTTC TTATAGCATTGTTCTCAGTGGCAACAATGGGAACATATGGATAGATAAGTGTTATACAGGCTGCCAGATCGTTTGATATA AACTCGTAGTTGATAAATGGAGTTGACAATCTGAGAAGGATGGTCTGGATTATGCATCTTTTAAATTCAAATGTAGCATG CTTGTTAGAAGAAAATTGAATGTTTGTTAAAAGAGGATGTTGCTAGCCTTTCATTTTTTACAGACACACTAGCATTTGAG TAAACAGTGAAGCTGAAAGGATTCTTCTAAAATGGCTGTCGAAAAAAATAATGCTCTTATTATTTGTTTTATTCTTCTTT ATCTTCTGTTCTTTTCCTTGCCTTTTACTATCTGGCCATTCTCTTGGATCTGAACGAGTTGAATAATTGTAGAGAGAAGA AATATATTTCATGATTCAAAGAGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAATTCACATCATTCTTGGATCTTATAA ATTACTCTTTGGTCAAGGTAAAATTTATTGCAACTTATTGTGTTATTAATACATGTAAAATACATCAGGATGATCACATT GTTCATTGCAGTCTGGAGTATCTTGTGTTCAATTGAATGGAAGCATGTCATTGACTGCTCGGGATGCTGCCATTAAAAGA TTTAATGATGATCCAGACTGCAGAATTTTTCTCTTGAGTTTGAAGGCGGCTGGTGTTGCCCTCAATTTGACTGTAGCATC TCATGTAAGAATCTCTTTCTATCATTCCTTTCGTCATTGTTAAGCTGAACCTTCGTTTGAATTTTTATTGAACTTTTGTT AAACAAATCTTTTTATTGAATTTTTGTGGCTTCATTTGTTGGGTGTGTTCAGGTTTTCCTCATGGAGCCTTGGTGGAACC CAGGCGTAGAGCAACAGGCTCAGGATAGAATTCACCGAATAGGGCAAAATAAACCTATAAGGTTTTGTGCTCTTCAACAT TCTCAAAAGTTAATATAGCAGCAGATAAGTTCGTCCTTTCTTCATGATCTGACCCCACCTTTTTGTAGAGTTGTGAAGTT TATCACAGAGAACACCATCGAGGAGAGGATTCTGAAGCTGCAGCAGCAGAAGGAAGCAGTGTCTGAAGGGTAAGTGTGAA CAGGGTTGAGAGTTTCTGCACATTTTCGTTGAACTCAATGTGAATCCACATTGAACTCGAATTGCCAAAATCACGTTTCT CGATCCACATTGAACCTAATGTGGCAAATTTTAAATTTTCTGTTGATATATTGCAATATGTGAAATCATGTTGTCAAACA AAACACACACTTAGCCTTGTTGATTTCTGTTTTTTTTTTTTTAATTCTCTCTCCCTCTAAATTTACAGGCTAATAGACGG CTCTTCTGAAGCTTTGGGGAGATTGAAACTGTCCGAGATGATAAACCTGTTTGGATTTTAACTGAAAAGCCAGGCAAAAA TGTAAAAGTAACTCCATGCTTCATTTTCCTTAACGTGATGCAATGCATCAAAATTTTGATATTATGTTGCAGCTGACATT TGGCGAAATGCACTTGCTCACGGTAAATAGGCAATGTAGGGGCTATGAGCCCACATCCACTTTTTTTAGTTTGTTTTGTT TTCATGGATTGAACAGTAAATACAAAATGTAATTTTGCTAGAACTCTAAGAACTAACTAGAAAAAAAAGAAGCCAACTTG TTCATGCCAGATATAAAGATGATCATGGTTAGCAAGACTTTTTTTTCCTTAATCGTTTTTAGTCTTTTTATATTAGTCCA TACAGTTTTAATTGAGTGGTTTAATTCTATCAGG
CDS sequence (LotjaGi3g1v0469700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGAGAAGAAGAACAAGATTCCGCCGGTAATGGGAAAGAAGAATTGACGGTGGAAACCGCCGAGCCTTCCTCTGATCT CACCGTACCTCTACTCAGGTACCAGAAGGAATGGCTAGCGTGGGGTTTGAATCAAGAAAATTCTCCTGTTAGAGGTGGAA TTCTCGCAGATGAAATGGGGATGGGGAAGACTATTCAAGCAATTGCCCTTGTTCTTGCCAAACGTCAAGAATTGCGACAA ACGGGTCGCGAAATTGAAGACGAATGGGTACCTTCAACCTCAGGTTCTTTTGCTACATGGTTGCCTGCGATCAAAGGAAC GCTTGTTGTTTGTCCCCCGGTCGCTGTCTCTCAATGGGTCAACGAAATTGATCGCTTTACTGTCAAAGGAAGCACCAAGG TGCTGGTCTATCATGGAGCTAACAGAGTGAAGAGCCGCGACCAGTTCTCGGAGTTTGATTTTGTTATAACTACTTACTCT ATTGTTCAGTCTCAGTACAAGAAGGCCATGAGTGAATGTCTCTGTTGTGGAAACATGTTTTTGGAGCCTAATTCTCGTCA AGACCATGTTTGTAGGCCTCATGTTAGAGCTGAAAATCCACCACTTCTACATGCTGTAATGTGGCAGCGGATCATATTGG ATGAGGCGCACTATATAAAAGCTATACATGGCAGCACTACTAAAGCAGTTCTTGCTTTAGAGTCTTCCTACAAATGGGCA TTAAGTGGCACTCCCCTTCAGAACAATGTCGGAGAGCTGTATTCTCTGGTGCGGTTCCTGCAAGTTACTCCTTATGCCTA CTTATTGTGCAAGGACTGTGATTGTAAGATTCTTGAGAAGAAAAGAAATGAAAAATGTTCGAAATGCAGCCATGGTACTT CAAGGCATTTCTCTTGGTGGATTAAATTAAATAGGAACAGAGGTAGTATGTTATTGGTTAAACACAAAATTTTGAAGAAC ATAATGCTAAGGCGCACTAAAATAGGCAGGGCTGCTGATCTTGCGTTTCCAGAAAAAATTATTTCAGTGAGAAGAGTCTA CCTGGACGTAAAGGAGCAAGACTATTACAAGTCAACATGTATTGAATGTCTGAAATCGGTTAATACATATGTTGAAGCAA ATATTGTGATGAATCATTATGCTGATATATTTGGTCTCCTCACGAAGCTGCGTCAGGCTGTTGATCACCCATACCTTGTG GTATATTCTAAACCTGAAGCGTTAAAAGGGGCAGGTGTGGCAGCAAGTGATGGTACTGTTGAACAAGTATGTGGCATTTG TGATGAGCCAGTGGAAGACCCTGTAGTTACCTCTTGTGAGCATGTATTTTGTAATGCATGCCTAGTAGACTTCTCTGCTT CCATGGATCCAGTGCTATGCCCCTCATGCTCTCTACCAATAACTGTTGAGATAACTTCCAGCAAGGATGTCAGTGGCAAG TCTAATGATACAGCAATTAAGGGTTTCAGATCATCAAGCATCTTATACAAAATTGAGCTTGAGAACTTTCAGACAAGCAC TAAAATAGAGGCTTTGCATTGTTCTCAGTGGCAACAATGGGAACATATGGATAGATAA
Protein sequence (LotjaGi3g1v0469700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MREEEQDSAGNGKEELTVETAEPSSDLTVPLLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALVLAKRQELRQ TGREIEDEWVPSTSGSFATWLPAIKGTLVVCPPVAVSQWVNEIDRFTVKGSTKVLVYHGANRVKSRDQFSEFDFVITTYS IVQSQYKKAMSECLCCGNMFLEPNSRQDHVCRPHVRAENPPLLHAVMWQRIILDEAHYIKAIHGSTTKAVLALESSYKWA LSGTPLQNNVGELYSLVRFLQVTPYAYLLCKDCDCKILEKKRNEKCSKCSHGTSRHFSWWIKLNRNRGSMLLVKHKILKN IMLRRTKIGRAADLAFPEKIISVRRVYLDVKEQDYYKSTCIECLKSVNTYVEANIVMNHYADIFGLLTKLRQAVDHPYLV VYSKPEALKGAGVAASDGTVEQVCGICDEPVEDPVVTSCEHVFCNACLVDFSASMDPVLCPSCSLPITVEITSSKDVSGK SNDTAIKGFRSSSILYKIELENFQTSTKIEALHCSQWQQWEHMDR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| Gene3D | 2 | 350 | 349 | 3.2E-51 | ||
| PANTHER | 6 | 512 | 507 | 4.2E-142 | – | |
| PANTHER | 6 | 512 | 507 | 4.2E-142 | – | |
| SUPERFAMILY | 20 | 325 | 306 | 9.23E-43 | ||
| SMART | 27 | 279 | 253 | 5.6E-23 | ||
| CDD | 31 | 325 | 295 | 2.06076E-88 | – | |
| ProSiteProfiles | 44 | 263 | 220 | 16.275 | ||
| Pfam | 46 | 400 | 355 | 7.0E-57 | ||
| Gene3D | 410 | 525 | 116 | 3.5E-11 | ||
| SUPERFAMILY | 421 | 468 | 48 | 6.6E-14 | – | |
| SMART | 424 | 463 | 40 | 8.6E-6 | ||
| Pfam | 424 | 463 | 40 | 3.1E-6 | ||
| ProSiteProfiles | 424 | 464 | 41 | 11.914 | ||
| ProSitePatterns | 439 | 448 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi3g1v0469700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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