Domain Predictions — View

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cd18021

Source: CDD

Description

DEXHc_Brr2_2

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 4

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi3g1v0141500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	U5 small nuclear ribonucleoprotein helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp\|Q9SYP1\|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr\|A0A0L9UIS3\|A0A0L9UIS3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0141500	Domains Coil G3DSA:1.10.10.2530 G3DSA:1.10.150.20 G3DSA:1.10.3380.10 G3DSA:2.60.40.150 G3DSA:3.40.50.300 IPR001650 IPR003593 IPR004179 IPR011545 IPR014001 IPR014756 IPR027417 IPR035892 IPR036390 IPR041094 PF00270 PF00271 PF02889 PF18149 PIRSF039073 PS51192 PS51194 PTHR12131 PTHR12131:SF12 SM00382 SM00487 SM00490 SM00973 SSF158702 SSF46785 SSF52540 SSF81296 cd18019 cd18021 cd18795 mobidb-lite	37
LotjaGi3g1v0141500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	U5 small nuclear ribonucleoprotein helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp\|Q9SYP1\|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr\|A0A0L9UIS3\|A0A0L9UIS3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0141500	Domains Coil G3DSA:1.10.10.2530 G3DSA:1.10.150.20 G3DSA:1.10.3380.10 G3DSA:2.60.40.150 G3DSA:3.40.50.300 IPR001650 IPR003593 IPR004179 IPR011545 IPR014001 IPR014756 IPR027417 IPR035892 IPR036390 IPR041094 PF00270 PF00271 PF02889 PF18149 PIRSF039073 PS51192 PS51194 PTHR12131 PTHR12131:SF12 SM00382 SM00487 SM00490 SM00973 SSF158702 SSF46785 SSF52540 SSF81296 cd18019 cd18021 cd18795 mobidb-lite	37
LotjaGi3g1v0141500.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent helicase hrq1; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp\|Q9SYP1\|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr\|G7IJ55\|G7IJ55_MEDTR U5 small nuclear ribonucleoprotein 200 kDa helicase; Found in the gene: LotjaGi3g1v0141500	Domains G3DSA:1.10.10.2530 G3DSA:1.10.150.20 G3DSA:1.10.3380.10 G3DSA:2.60.40.150 G3DSA:3.40.50.300 IPR001650 IPR004179 IPR011545 IPR014001 IPR014756 IPR027417 IPR035892 IPR036390 PF00270 PF02889 PS51192 PS51194 PTHR24075 PTHR24075:SF5 SM00487 SM00490 SM00973 SSF158702 SSF46785 SSF52540 SSF81296 cd18021 cd18795	28
LotjaGi3g1v0141500.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp\|Q9SYP1\|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr\|A0A0L9UIS3\|A0A0L9UIS3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0141500	Domains Coil G3DSA:1.10.10.2530 G3DSA:1.10.150.20 G3DSA:1.10.3380.10 G3DSA:2.60.40.150 G3DSA:3.40.50.300 IPR001650 IPR003593 IPR004179 IPR011545 IPR014001 IPR014756 IPR027417 IPR035892 IPR036390 PF00270 PF00271 PF02889 PIRSF039073 PS51192 PS51194 PTHR12131 PTHR12131:SF12 SM00382 SM00487 SM00490 SM00973 SSF158702 SSF46785 SSF52540 SSF81296 SignalP-noTM cd18019 cd18021 cd18795	35

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd18795	CDD	1	25.00