Domain Predictions — View

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cd18795

Source: CDD

Description

SF2_C_Ski2

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 16

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0188900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G61140.2 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp\|Q9FNQ1\|DEXHE_ARATH DExH-box ATP-dependent RNA helicase DExH14; TrEMBL-Plants: tr\|K7KW51\|K7KW51_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0188900	Domains Coil G3DSA:1.10.10.2530 G3DSA:1.10.150.20 G3DSA:1.10.3380.10 G3DSA:2.60.40.150 G3DSA:3.40.50.300 IPR001650 IPR003593 IPR004179 IPR011545 IPR014001 IPR014756 IPR027417 IPR035892 IPR036390 PF00270 PF00271 PF02889 PIRSF039073 PS51192 PS51194 PTHR12131 PTHR12131:SF16 SM00382 SM00487 SM00490 SM00973 SSF158702 SSF46785 SSF52540 SSF81296 cd18020 cd18022 cd18795 mobidb-lite	35
LotjaGi1g1v0188900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT5G61140.2 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp\|Q9FNQ1\|DEXHE_ARATH DExH-box ATP-dependent RNA helicase DExH14; TrEMBL-Plants: tr\|A0A0B2Q999\|A0A0B2Q999_GLYSO Activating signal cointegrator 1 complex subunit 3; Found in the gene: LotjaGi1g1v0188900	Domains Coil G3DSA:1.10.10.2530 G3DSA:1.10.150.20 G3DSA:1.10.3380.10 G3DSA:2.60.40.150 G3DSA:3.40.50.300 IPR001650 IPR003593 IPR004179 IPR011545 IPR014001 IPR014756 IPR027417 IPR035892 IPR036390 PF00270 PF00271 PF02889 PIRSF039073 PS51192 PS51194 PTHR12131 PTHR12131:SF16 SM00382 SM00487 SM00490 SM00973 SSF158702 SSF46785 SSF52540 SSF81296 cd18020 cd18022 cd18795 mobidb-lite	35
LotjaGi1g1v0198600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA helicase; TAIR: AT4G32700.2 MUS308 and mammalian DNA polymerase-like protein; Swiss-Prot: sp\|Q588V7\|TEB_ARATH Helicase and polymerase-containing protein TEBICHI; TrEMBL-Plants: tr\|K7M6P7\|K7M6P7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0198600	Domains Coil G3DSA:1.10.150.20 G3DSA:1.10.3380.20 G3DSA:1.20.1060.10 G3DSA:3.30.420.10 G3DSA:3.30.70.370 G3DSA:3.40.50.300 IPR001098 IPR001650 IPR002298 IPR011545 IPR014001 IPR027417 IPR036397 IPR043502 PF00270 PF00271 PF00476 PR00868 PS51192 PS51194 PTHR10133 PTHR10133:SF27 SM00482 SM00487 SM00490 SSF158702 SSF52540 SSF56672 cd08638 cd18026 cd18795 mobidb-lite	33
LotjaGi1g1v0553600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase family protein; TAIR: AT1G59760.1 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp\|Q9XIF2\|MTR4_ARATH DExH-box ATP-dependent RNA helicase DExH9; TrEMBL-Plants: tr\|A0A0B2QTI2\|A0A0B2QTI2_GLYSO Superkiller viralicidic activity 2-like 2; Found in the gene: LotjaGi1g1v0553600	Domains Coil G3DSA:1.10.3380.30 G3DSA:1.20.1500.20 G3DSA:2.40.30.300 G3DSA:3.40.50.300 IPR001650 IPR012961 IPR025696 IPR027417 PF00271 PF08148 PF13234 PS51194 PTHR12131 PTHR12131:SF7 SM00490 SM01142 SSF52540 cd18795	19
LotjaGi1g1v0553600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase family protein; TAIR: AT1G59760.1 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp\|Q9XIF2\|MTR4_ARATH DExH-box ATP-dependent RNA helicase DExH9; TrEMBL-Plants: tr\|V7AZU7\|V7AZU7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0553600	Domains Coil G3DSA:1.10.3380.30 G3DSA:1.20.1500.20 G3DSA:2.40.30.300 G3DSA:3.40.50.300 IPR001650 IPR011545 IPR012961 IPR014001 IPR016438 IPR025696 IPR027417 PF00270 PF00271 PF08148 PF13234 PIRSF005198 PS51192 PS51194 PTHR12131 PTHR12131:SF7 SM00487 SM00490 SM01142 SSF52540 cd18024 cd18795 mobidb-lite	28
LotjaGi2g1v0312600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase family protein; TAIR: AT1G70070.1 DEAD/DEAH box helicase; Swiss-Prot: sp\|B9DFG3\|ISE2_ARATH DExH-box ATP-dependent RNA helicase DExH15 chloroplastic; TrEMBL-Plants: tr\|K7K1N0\|K7K1N0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0312600	Domains Coil G3DSA:1.10.3380.30 G3DSA:3.40.50.300 IPR001650 IPR011545 IPR012961 IPR014001 IPR027417 PF00270 PF08148 PS51192 PS51194 PTHR24031 PTHR24031:SF664 SM00487 SM00490 SM01142 SSF52540 cd18024 cd18795 mobidb-lite	21
LotjaGi3g1v0141500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	U5 small nuclear ribonucleoprotein helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp\|Q9SYP1\|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr\|A0A0L9UIS3\|A0A0L9UIS3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0141500	Domains Coil G3DSA:1.10.10.2530 G3DSA:1.10.150.20 G3DSA:1.10.3380.10 G3DSA:2.60.40.150 G3DSA:3.40.50.300 IPR001650 IPR003593 IPR004179 IPR011545 IPR014001 IPR014756 IPR027417 IPR035892 IPR036390 IPR041094 PF00270 PF00271 PF02889 PF18149 PIRSF039073 PS51192 PS51194 PTHR12131 PTHR12131:SF12 SM00382 SM00487 SM00490 SM00973 SSF158702 SSF46785 SSF52540 SSF81296 cd18019 cd18021 cd18795 mobidb-lite	37
LotjaGi3g1v0141500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	U5 small nuclear ribonucleoprotein helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp\|Q9SYP1\|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr\|A0A0L9UIS3\|A0A0L9UIS3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0141500	Domains Coil G3DSA:1.10.10.2530 G3DSA:1.10.150.20 G3DSA:1.10.3380.10 G3DSA:2.60.40.150 G3DSA:3.40.50.300 IPR001650 IPR003593 IPR004179 IPR011545 IPR014001 IPR014756 IPR027417 IPR035892 IPR036390 IPR041094 PF00270 PF00271 PF02889 PF18149 PIRSF039073 PS51192 PS51194 PTHR12131 PTHR12131:SF12 SM00382 SM00487 SM00490 SM00973 SSF158702 SSF46785 SSF52540 SSF81296 cd18019 cd18021 cd18795 mobidb-lite	37
LotjaGi3g1v0141500.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent helicase hrq1; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp\|Q9SYP1\|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr\|G7IJ55\|G7IJ55_MEDTR U5 small nuclear ribonucleoprotein 200 kDa helicase; Found in the gene: LotjaGi3g1v0141500	Domains G3DSA:1.10.10.2530 G3DSA:1.10.150.20 G3DSA:1.10.3380.10 G3DSA:2.60.40.150 G3DSA:3.40.50.300 IPR001650 IPR004179 IPR011545 IPR014001 IPR014756 IPR027417 IPR035892 IPR036390 PF00270 PF02889 PS51192 PS51194 PTHR24075 PTHR24075:SF5 SM00487 SM00490 SM00973 SSF158702 SSF46785 SSF52540 SSF81296 cd18021 cd18795	28
LotjaGi3g1v0141500.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp\|Q9SYP1\|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr\|A0A0L9UIS3\|A0A0L9UIS3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0141500	Domains Coil G3DSA:1.10.10.2530 G3DSA:1.10.150.20 G3DSA:1.10.3380.10 G3DSA:2.60.40.150 G3DSA:3.40.50.300 IPR001650 IPR003593 IPR004179 IPR011545 IPR014001 IPR014756 IPR027417 IPR035892 IPR036390 PF00270 PF00271 PF02889 PIRSF039073 PS51192 PS51194 PTHR12131 PTHR12131:SF12 SM00382 SM00487 SM00490 SM00973 SSF158702 SSF46785 SSF52540 SSF81296 SignalP-noTM cd18019 cd18021 cd18795	35
LotjaGi3g1v0141500.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	U5 small nuclear ribonucleoprotein helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp\|Q9SYP1\|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr\|G7IJ55\|G7IJ55_MEDTR U5 small nuclear ribonucleoprotein 200 kDa helicase; Found in the gene: LotjaGi3g1v0141500	Domains G3DSA:1.10.10.2530 G3DSA:1.10.150.20 G3DSA:1.10.3380.10 G3DSA:2.60.40.150 G3DSA:3.40.50.300 IPR001650 IPR004179 IPR014756 IPR027417 IPR035892 IPR036390 PF02889 PTHR24075 PTHR24075:SF13 SM00490 SM00973 SSF158702 SSF46785 SSF52540 SSF81296 cd18795	21
LotjaGi4g1v0439700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase family protein; TAIR: AT2G06990.1 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp\|Q9ZVW2\|HEN2_ARATH DExH-box ATP-dependent RNA helicase DExH10; TrEMBL-Plants: tr\|I1KPQ5\|I1KPQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0439700	Domains Coil G3DSA:1.10.3380.30 G3DSA:1.20.1500.20 G3DSA:2.40.30.300 G3DSA:3.40.50.300 IPR001650 IPR011545 IPR012961 IPR014001 IPR016438 IPR025696 IPR027417 PF00270 PF00271 PF08148 PF13234 PIRSF005198 PS51192 PS51194 PTHR12131 PTHR12131:SF13 SM00487 SM00490 SM01142 SSF52540 cd13154 cd18024 cd18795 mobidb-lite	29
LotjaGi4g1v0439700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase family protein; TAIR: AT2G06990.1 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp\|Q9ZVW2\|HEN2_ARATH DExH-box ATP-dependent RNA helicase DExH10; TrEMBL-Plants: tr\|I1KPQ5\|I1KPQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0439700	Domains Coil G3DSA:1.10.3380.30 G3DSA:1.20.1500.20 G3DSA:2.40.30.300 G3DSA:3.40.50.300 IPR001650 IPR011545 IPR012961 IPR014001 IPR016438 IPR025696 IPR027417 PF00270 PF00271 PF08148 PF13234 PIRSF005198 PS51192 PS51194 PTHR12131 PTHR12131:SF13 SM00487 SM00490 SM01142 SSF52540 cd13154 cd18024 cd18795 mobidb-lite	29
LotjaGi5g1v0347000_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase; TAIR: AT1G20960.1 U5 small nuclear ribonucleoprotein helicase; Swiss-Prot: sp\|Q9SYP1\|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12; TrEMBL-Plants: tr\|A0A0B2R3L5\|A0A0B2R3L5_GLYSO U5 small nuclear ribonucleoprotein 200 kDa helicase; Found in the gene: LotjaGi5g1v0347000_LC	Domains G3DSA:1.10.10.2530 G3DSA:1.10.150.20 G3DSA:1.10.3380.10 G3DSA:2.60.40.150 G3DSA:3.40.50.300 IPR001650 IPR004179 IPR011545 IPR014001 IPR014756 IPR027417 IPR035892 IPR036390 NON_CYTOPLASMIC_DOMAIN PF00270 PF00271 PF02889 PS51192 PS51194 PTHR12131 PTHR12131:SF12 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00487 SM00490 SM00973 SSF158702 SSF46785 SSF52540 SSF81296 SignalP-noTM cd18019 cd18795	35
LotjaGi6g1v0134200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase family protein; TAIR: AT3G46960.2 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp\|F4JAA5\|SKI2_ARATH DExH-box ATP-dependent RNA helicase DExH11; TrEMBL-Plants: tr\|I1N032\|I1N032_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0134200	Domains G3DSA:1.10.3380.30 G3DSA:1.20.1500.20 G3DSA:2.40.30.300 G3DSA:3.40.50.300 IPR001650 IPR011545 IPR012961 IPR014001 IPR016438 IPR025696 IPR027417 IPR040801 PF00270 PF08148 PF13234 PF17911 PIRSF005198 PS51192 PS51194 PTHR12131 PTHR12131:SF15 SM00487 SM00490 SM01142 SSF52540 cd18027 cd18795 mobidb-lite	28
LotjaGi6g1v0134200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase family protein; TAIR: AT3G46960.1 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp\|F4JAA5\|SKI2_ARATH DExH-box ATP-dependent RNA helicase DExH11; TrEMBL-Plants: tr\|I1N032\|I1N032_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0134200	Domains G3DSA:1.10.3380.30 G3DSA:1.20.1500.20 G3DSA:2.40.30.300 G3DSA:3.40.50.300 IPR001650 IPR011545 IPR012961 IPR014001 IPR016438 IPR025696 IPR027417 IPR040801 PF00270 PF08148 PF13234 PF17911 PIRSF005198 PS51192 PS51194 PTHR12131 PTHR12131:SF15 SM00487 SM00490 SM01142 SSF52540 cd18027 cd18795 mobidb-lite	28

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	6.25