Domain Predictions — View

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cd18034

Source: CDD

Description

DEXHc_dicer

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 9

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0372300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Dicer-like protein 3; TAIR: AT3G43920.2 dicer-like 3; Swiss-Prot: sp\|Q5N870\|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a; TrEMBL-Plants: tr\|K7KIB7\|K7KIB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0372300	Domains G3DSA:1.10.1520.10 G3DSA:2.170.260.10 G3DSA:3.30.160.20 G3DSA:3.30.160.380 G3DSA:3.40.50.300 IPR000999 IPR001650 IPR003100 IPR005034 IPR006935 IPR014001 IPR014720 IPR027417 IPR036085 IPR036389 IPR038248 PF00271 PF00636 PF02170 PF03368 PF04851 PS00517 PS50137 PS50142 PS50821 PS51192 PS51194 PS51327 PTHR14950 PTHR14950:SF31 SM00487 SM00490 SM00535 SM00949 SSF101690 SSF52540 SSF69065 cd00048 cd00593 cd18034 cd18802	41
LotjaGi1g1v0798000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Endoribonuclease Dicer-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp\|Q9SP32\|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr\|K7N0F5\|K7N0F5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798000	Domains G3DSA:1.10.1520.10 G3DSA:2.170.260.10 G3DSA:3.30.160.20 G3DSA:3.30.160.380 G3DSA:3.40.50.300 IPR000999 IPR001650 IPR003100 IPR005034 IPR006935 IPR014001 IPR014720 IPR027417 IPR036085 IPR036389 IPR038248 PF00271 PF00636 PF02170 PF03368 PF04851 PF14709 PS00517 PS50137 PS50142 PS50821 PS51192 PS51194 PS51327 PTHR14950 PTHR14950:SF44 SM00358 SM00490 SM00535 SM00949 SSF101690 SSF52540 SSF54768 SSF69065 cd00048 cd00593 cd18034 cd18802 mobidb-lite	44
LotjaGi1g1v0798000.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Endoribonuclease Dicer-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp\|Q9SP32\|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr\|K7N0F5\|K7N0F5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798000	Domains G3DSA:1.10.1520.10 G3DSA:2.170.260.10 G3DSA:3.30.160.20 G3DSA:3.30.160.380 G3DSA:3.40.50.300 IPR000999 IPR001650 IPR003100 IPR005034 IPR006935 IPR014001 IPR014720 IPR027417 IPR036085 IPR036389 IPR038248 PF00271 PF00636 PF02170 PF03368 PF04851 PF14709 PS00517 PS50137 PS50142 PS50821 PS51192 PS51194 PS51327 PTHR14950 PTHR14950:SF44 SM00358 SM00490 SM00535 SM00949 SSF101690 SSF52540 SSF54768 SSF69065 cd00048 cd00593 cd18034 cd18802 mobidb-lite	44
LotjaGi1g1v0798000.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Endoribonuclease Dicer-like protein 3; TAIR: AT1G01040.1 dicer-like 1; Swiss-Prot: sp\|Q9SP32\|DCL1_ARATH Endoribonuclease Dicer homolog 1; TrEMBL-Plants: tr\|K7N0F5\|K7N0F5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798000	Domains G3DSA:1.10.1520.10 G3DSA:2.170.260.10 G3DSA:3.30.160.20 G3DSA:3.30.160.380 IPR000999 IPR001650 IPR003100 IPR005034 IPR006935 IPR014001 IPR014720 IPR027417 IPR036085 IPR036389 IPR038248 PF00271 PF00636 PF02170 PF03368 PF04851 PF14709 PS00517 PS50137 PS50142 PS50821 PS51192 PS51194 PS51327 PTHR14950 PTHR14950:SF44 SM00358 SM00487 SM00490 SM00535 SM00949 SSF101690 SSF52540 SSF54768 SSF69065 cd00048 cd00593 cd18034 cd18802 mobidb-lite	44
LotjaGi2g1v0077900_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase RhlB; TAIR: AT3G03300.1 dicer-like 2; Swiss-Prot: sp\|Q3EBC8\|DCL2_ARATH Endoribonuclease Dicer homolog 2; TrEMBL-Plants: tr\|A0A072TSQ0\|A0A072TSQ0_MEDTR Endoribonuclease dicer-like protein; Found in the gene: LotjaGi2g1v0077900_LC	Domains CYTOPLASMIC_DOMAIN G3DSA:3.40.50.300 IPR011545 IPR014001 IPR027417 NON_CYTOPLASMIC_DOMAIN PF00270 PS51192 PTHR14950 PTHR14950:SF37 SM00487 SSF52540 TRANSMEMBRANE cd18034	14
LotjaGi2g1v0077900_LC.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	ATP-dependent RNA helicase RhlB; TAIR: AT3G03300.1 dicer-like 2; Swiss-Prot: sp\|Q3EBC8\|DCL2_ARATH Endoribonuclease Dicer homolog 2; TrEMBL-Plants: tr\|I1L0G0\|I1L0G0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0077900_LC	Domains G3DSA:3.30.160.380 G3DSA:3.40.50.300 IPR001650 IPR005034 IPR011545 IPR014001 IPR027417 IPR038248 PF00270 PF00271 PF03368 PS51192 PS51194 PS51327 PTHR14950 PTHR14950:SF37 SM00487 SM00490 SSF52540 cd18034 cd18802	21
LotjaGi4g1v0283700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Dicer-like 3; TAIR: AT5G20320.1 dicer-like 4; Swiss-Prot: sp\|P84634\|DCL4_ARATH Dicer-like protein 4; TrEMBL-Plants: tr\|K7MKZ2\|K7MKZ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0283700	Domains G3DSA:1.10.1520.10 G3DSA:2.170.260.10 G3DSA:3.30.160.20 G3DSA:3.30.160.380 G3DSA:3.40.50.300 IPR000999 IPR001650 IPR003100 IPR005034 IPR006935 IPR014001 IPR014720 IPR027417 IPR036085 IPR036389 IPR038248 PF00271 PF00636 PF02170 PF03368 PF04851 PF14709 PS00517 PS50137 PS50142 PS50821 PS51192 PS51194 PS51327 PTHR14950 PTHR14950:SF15 SM00358 SM00487 SM00490 SM00535 SM00949 SSF101690 SSF52540 SSF54768 SSF69065 cd00048 cd00593 cd18034 cd18802 mobidb-lite	45
LotjaGi6g1v0269600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Endoribonuclease Dicer-like protein 3; TAIR: AT3G03300.1 dicer-like 2; Swiss-Prot: sp\|Q3EBC8\|DCL2_ARATH Endoribonuclease Dicer homolog 2; TrEMBL-Plants: tr\|I1L0G0\|I1L0G0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0269600	Domains G3DSA:1.10.1520.10 G3DSA:2.170.260.10 G3DSA:3.30.160.380 G3DSA:3.40.50.300 IPR000999 IPR001650 IPR003100 IPR005034 IPR011545 IPR014001 IPR027417 IPR036085 IPR036389 IPR038248 PF00270 PF00271 PF00636 PF02170 PF03368 PS00517 PS50142 PS50821 PS51192 PS51194 PS51327 PTHR14950 PTHR14950:SF37 SM00487 SM00490 SM00535 SM00949 SSF101690 SSF52540 SSF69065 cd00593 cd18034 cd18802	37
LotjaGi6g1v0269600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Endoribonuclease Dicer-like protein 3; TAIR: AT3G03300.1 dicer-like 2; Swiss-Prot: sp\|Q3EBC8\|DCL2_ARATH Endoribonuclease Dicer homolog 2; TrEMBL-Plants: tr\|I1L0G0\|I1L0G0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0269600	Domains G3DSA:1.10.1520.10 G3DSA:2.170.260.10 G3DSA:3.30.160.380 G3DSA:3.40.50.300 IPR000999 IPR001650 IPR003100 IPR005034 IPR011545 IPR014001 IPR027417 IPR036085 IPR036389 IPR038248 PF00270 PF00271 PF00636 PF02170 PF03368 PS00517 PS50142 PS50821 PS51192 PS51194 PS51327 PTHR14950 PTHR14950:SF37 SM00487 SM00490 SM00535 SM00949 SSF101690 SSF52540 SSF69065 cd00593 cd18034 cd18802	37

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd18802	CDD	1	11.11