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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0230800 |
| Transcript ID | LotjaGi1g1v0230800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA polymerase III subunit; TAIR: AT4G24790.1 AAA-type ATPase family protein; Swiss-Prot: sp|F4JRP8|STIL2_ARATH Protein STICHEL-like 2; TrEMBL-Plants: tr|A0A151RVR2|A0A151RVR2_CAJCA DNA polymerase III subunit gamma/tau; Found in the gene: LotjaGi1g1v0230800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:54117667..54122999) extracted from Lotus japonicus Gifu genome v1.2.
AGCCGACCGTAGTTGCAGCTTTTCTCTCTTCAACTAAATTAACTGAAACCAACACCGAAATTACCAGAAAGCCCCTACTT TCTTTCTTTCTTTCTTTCTGAGTTTGGCTCGCTACCCGAGACAAAGTTCGGAACCCCCCACCAAAATTGCGCTCCCCCCT TTCACAAACACGTTTTTGGCTCCAGTCACAAGCCTTGGCATTGGCATGCCTTAACAGTAACTAACACCCCCCGTATTTAT TACATTTACTATTTTGCCACTCCTCTCACCTTCACCTTCTCTATGAATGTGCATATTTATATCACCCCCTTAATTCCTCG CTTGCATCCAACCACCGCCACACACACACACTCGTTTTCTTTTCTCCTTCTCCATTCTCCAAGAGACACTTCTTCTTTCT TTCATATATTTTTTCTAGTCAAGGTTTGCCATCTTTTTCTTTCAAAACTTTGTTGTTTCGCTTTGTTTATTTTATTTCCA TCTATCTAGTCTACTACAATATTTTATTTATTGAAATTTGAACTCCAGATTCTCCCCTACCCTACGTTTCTATTTTATTT TTTGTTTTAATTGCTTTATTTGTATGTTTTCATATTTCTTGTAGTAATGCTGAGGAAATGGAAACAGCTGCGACAACACA CACCGCTTGCTCTGTAGTGGAGAAGAAGAAATGTTGATGCCTTCCTCATTGCTCTGTGTTTCTCTTTTTGAAGGTACTGC ATTTTCTTCTCTTGTTTTGTGTGACAAATGAGTCACCTTTTTATAGCTAACAAAAGAAACCATTATTCACTTTAATTTAT TTCCAGAGTGACTATGAATCTGAAGGTCAAATGCATATTTTGTGAAAGGAAAAAATTGCTTTCCTTTTTGGCCCTGTTGC ATTTATTACTTTTTCTGGAATAGTGAAAAGGGGCTGAGATTTTGTGCTTTGCTGTGTAGACAGTGTTGTTTCATGCCCCC ACCCCTTTTTGTTGTGCAAGCAATTTGCGTGTGCCTGATTCTTTTTGCTTTTCATTTTCTTTTAGGTGAGGGTTTGCATT GTTTCTAGTGGATTCTGGTCATATGAGTGTGACAACATTAATCATTTCTCTTCCCATAAGAGTTAGCTTCTTCTAGAATC ACTTCATACAGTTAGACGGCGATGGATGGGCGGCGGCATTCTGTTGACATTCCCATTTCTAAAACTCTTGTAGCACTGAG GAGGGTCAGGTCATTGAGGGATCCATCAACTAATTCTATATGCAAACGCTCTTCTTTGATTGACAATGTGCAGTGGGAGA ATGGTTCGGGTAATGGGATTTCTCTATTGTTTCCGGAGGCTAGTAGGGAATGTGATTCTGATGATAATGTTGATTTCACA TCAAGGAATTTAGGTTTTAAGGGACAAAGAGTGCAGGATGCTACTGATTTTAAATTGGACTGTGGCTTGTTAGGTTCAAG GCTGAAACCTAGTGGGATGTCATTTCAGGACAGCCAACACAACGACGATGAGCTAGTTTACTCTAATCCAAATAGGCAAT GCAGTTCAGGAAATAAATCATCAAGTGAAAGCTGTGATAGCAACCATGGGGGTGAGGGATTAGATTTGGCTAGTATTGAG CCTCATAGTAATAATTTCAGGGATGGGGAATCATGCTTTATAGCTACTGCCAAATCATCTCAATTAGGGAGAATAGATCA CTCTAGGTCAGACAAAAAATCTCTACGTGCGAATCAAGTAAGACCAGCACAAGTAGAGGGTGGTATTGTTAACCATGTAG GCAATCCTTGTCTTTCTGTTCATGATGATTTCTCACCACACAGCACTTCAGTAGATATCAATCAAGATTTTGATGTTCTT GATAATAATGATAATGGATGTGGAATAAGCTTTTGTTGGTCAAAATCACCGAGGTTTAGAGAATCAAATCTTTACTCTAA GATAGAAGACCGTCCCTTGATATTGCACCAAGTTGATGACACTGATCTTCATGGAGATAGAAACATGAGACACGACGGTG GTGACATTAGTCCAACTTTGGAAACTCCTAGAAGTTTATCTATGAAATTCAGGCCTAATTCATTTAGTGATCTGGTGGGA CAGAATGTGGTAGTGAGATCTCTTTTAGGCGCCATCTCAAGAGGAATGATAGCATCATTTTATCTGTTCCATGGTCCACG TGGTACAGGCAAGACATCTGCTTCTAGGATATTTGCTGCAGCACTGAATTGCCTCTCTGTTGAGGGGCAAAAACCATGTG GCCTGTGTAGAGAGTGTGTTCTGTTCTTTTCTGGAAGAAGTAAAGAGGTTAAGGAAGTGGATTCTGTGAGAATCAATCGC ACAGACCAGGTTAAATCCCTCGTTAAGAATGCATGTATCCCTCCCATTTCCTCACGATTTAAGGTTTTCATTATTGATGA GTGCCAGTTACTGAAGGCTGAGACATGGGCGAGCCTTTCGAATAACCTAGAGAACCTTTCTGAGCATGTGGTTTTTGTTA TGATCACTCCTGATTTAGATAAACTTCCTCGAAGTGCAGTTTCCCGGGCTCAGACCTATCACTTTCCGAAGGTTAAAGAT GCTGACATTGCATGCAGATTAGAAAAGATTTGTGTTGAAGAAGGTCTTGATTTTGATCAGGCTGCTTTAGACTTCATTGC TGCAAAATCCTGTGGTTCTGTTAGGGATGCAGAAATGATGCTTGATCAGCTGAGTTTGCTTGGTAAAAAGATTAAACTTT CATTAGTTCATGAGCTTGTAAGTATAGTGCTTTTGGTCCATAAATTCCCTCGAAACTTTCTTCATTTTTATTCCCTCAAT ACTCAGGCTTGCCCTTTGTTGTTTGCAGACTGGGATTGTTTCTGATGATGAATTGCTCAATTTGCTGGATCTGGCTTTGT CATCTGACACTTCAAATACAGTTATAAGAGCTCGAGAGCTGATGAGATCCAGGATAGGTCCTTTGCAACTTGTATCACAG CTGGCAAATCTCATTATGGACATCCTTGCAGGGAAATGTGTAGATGGTGGTTCTGAGGTCAGAAGTAAATTTTCTGGTAG ATATACCTGTAAGTATTTTAAAGCATAAATTATCATATTCTATTCAGATTTAACTGAACTGAATACATTATCTGTGTGTT GAGAAGTCTCACATTGATTAGAGATATGGTCAAAAGAGTTCTTATTAAGGGTAGAGCATCCCTCACCCTAAGCTAGCTTT TGGGGTAGAGTTAGCCCTAACCCAAATTCTAAGAGGCTGTTTTATATATTTGCACTCCATGTTAGTGTCTATACTCTATT TCTGCTCATATCATATTTTTCTTGTCTGACTGTTTTTTTCTTTTCTCTATCATAGCGGAAGCCGACCTTCAGAAATTAAG CCGGGCAGTGAGAATACTTTCTGAAGCTGAGAAACAGTTAAGAATTTCAAAAAACCAAACAACGTGGTTAACTGTAGCTC TACTGCAGTTAAGCTCTGTAGATTATCCTTCCGTGGATGTAAATGATACAAAGTTGTGTTTGAGAGGTACAAGCAATGGA GTTGGGCTTTACTCCCCCACCCCTCCAATATTATTTATATTCTTTTAATTCATTTTCTCCTCCTAAGTGGCTGTCTTGGG TGGGGTTAACATAATGAAGTAGTTTCATTGGTTAGAAATTTCTATTTCAAGCTTTACCTTATTCCTTTAATGGATATGGA TGGTGATTTCTTCAATACATGATCTACAGAGCAGAGCATGGAGCATCTTGCTACAGGTCAGTGTGGCGACAAGTCATATA GATTAGGAGTGCAGGAGGATCACAAAGGAACATTGGATGCCATATGGTATAAAGCTACTGAGATATGTCAATCTGGTCAG CTCAAAACTTTTCTCAGGAAGAAGGGGAAGTTGTCTTCACTTCATGTAGATCGCAGTACATCATGTAATTTCTCATTTAT GTTTTATATTGCGCTGCTACTCTTCATTAACCATTCATATTAAAAATTTATTACACCAAAGTACAGCCATTCTCTTGTGT TAAATTCATTGTTTGGTCCCACTTTCTCTGAGAGAAATTTGCTTTTTAATTGTCTAAATTGATTCTCTTTTGAAAAGAAA CCAATTGTCTTAATTGACCTCTCTGAGAAATTTGCTCTTTTAACTGTCCAAATTAATTTCCTTTCAAGGGGAACTTCAGT CCCTGCTTTGTTGTTTGCAGTATGCACTTTTCTCATCCAAGTTTATCATGGAAACAAATAAAGGTTTTACAGAAATAATA TTTATGATCAAACAAATATGTGCCTTTCCATAATCTTGGTCAGCTATTTATATCTTTCACCTTGTATATGTGAATATGCT GAACTCATTTGTCATCGGTAGCTCTTCTGCTTTTTGGAAAGAAAAATTGTAGTCATATTTCCCAAACATTGTTAATACTC AGTGCTGAGTTAAGTAACGAATGAACAAAAATACTCTTAATTTTCAGGGCTTGCTATCGCCGAGTTGGAGTTCCGCCATC GGCACCATGTATCCAAGGCTGAGAAGTCATGGAAATTGATTGCAAGTTCGTTGCAGTTCATATTGGGTTGTAACATTGAG CTGAGGATCACTTATGAACCCCGTGCTTCTGATTCCAAGTATGCCAAACTGAAGAGGTCATCTTTCAGTATCTTTAGCTG TTCACGCAGAGCACAACAGAAATCATTATCGTCTAATGGAAGCGAATCAGATTATGCTGATCACGTCTCTCAAAATCCCA TGATAAAGGATAAAACTCTAACTTCCTCTGATTACCATGGAATGGATGTTGTAACAACTTTGAGAAGCTGCAAAGGGAAC TTGCTGAGCTCAGGAGAAAGATTTTTGAATAGGTCTTTCCAAGAGAATATGGGGACATCATGTTCTGAAGTTGATTCCTC TAAGGAAAAAGGAAACAGATGTGCACATTTAGTTCCATCAGTCCTTGAGTCAGATTATCAGTCCAACTGTTTTCCTCAAA ATCTCTGGCTTCAAAAGAAGTTCCGTTCTTCATATTCATCCAAGTCAACTTTGCAGGGTATCTAACAACAGGAAGATTTT GCTTTGTCTGTGCCGAACTGAACTGTACATGTTCTGAGACACACCTACACTTATGAACCCAGCATTTTCTCCAGTAGCTC TAAAAACTGCATCAAAGCCATTGAGAAAAAAAGTAGGTTGACTAGTTTTTCTTCTTTGTAAGCTTACATTGTTAAAATTA TTGTGACTGCAGTTATAGTAATAACCTAGTATAGTTGGGTAGAATCAACTCAATTTACATTCATGTGATGCGCTTGATTA AAAAACATGAAAATTTGATTCAACATATTGAAAATACATCTAGCATATGGGAT
CDS sequence (LotjaGi1g1v0230800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGGCGGCGGCATTCTGTTGACATTCCCATTTCTAAAACTCTTGTAGCACTGAGGAGGGTCAGGTCATTGAGGGA TCCATCAACTAATTCTATATGCAAACGCTCTTCTTTGATTGACAATGTGCAGTGGGAGAATGGTTCGGGTAATGGGATTT CTCTATTGTTTCCGGAGGCTAGTAGGGAATGTGATTCTGATGATAATGTTGATTTCACATCAAGGAATTTAGGTTTTAAG GGACAAAGAGTGCAGGATGCTACTGATTTTAAATTGGACTGTGGCTTGTTAGGTTCAAGGCTGAAACCTAGTGGGATGTC ATTTCAGGACAGCCAACACAACGACGATGAGCTAGTTTACTCTAATCCAAATAGGCAATGCAGTTCAGGAAATAAATCAT CAAGTGAAAGCTGTGATAGCAACCATGGGGGTGAGGGATTAGATTTGGCTAGTATTGAGCCTCATAGTAATAATTTCAGG GATGGGGAATCATGCTTTATAGCTACTGCCAAATCATCTCAATTAGGGAGAATAGATCACTCTAGGTCAGACAAAAAATC TCTACGTGCGAATCAAGTAAGACCAGCACAAGTAGAGGGTGGTATTGTTAACCATGTAGGCAATCCTTGTCTTTCTGTTC ATGATGATTTCTCACCACACAGCACTTCAGTAGATATCAATCAAGATTTTGATGTTCTTGATAATAATGATAATGGATGT GGAATAAGCTTTTGTTGGTCAAAATCACCGAGGTTTAGAGAATCAAATCTTTACTCTAAGATAGAAGACCGTCCCTTGAT ATTGCACCAAGTTGATGACACTGATCTTCATGGAGATAGAAACATGAGACACGACGGTGGTGACATTAGTCCAACTTTGG AAACTCCTAGAAGTTTATCTATGAAATTCAGGCCTAATTCATTTAGTGATCTGGTGGGACAGAATGTGGTAGTGAGATCT CTTTTAGGCGCCATCTCAAGAGGAATGATAGCATCATTTTATCTGTTCCATGGTCCACGTGGTACAGGCAAGACATCTGC TTCTAGGATATTTGCTGCAGCACTGAATTGCCTCTCTGTTGAGGGGCAAAAACCATGTGGCCTGTGTAGAGAGTGTGTTC TGTTCTTTTCTGGAAGAAGTAAAGAGGTTAAGGAAGTGGATTCTGTGAGAATCAATCGCACAGACCAGGTTAAATCCCTC GTTAAGAATGCATGTATCCCTCCCATTTCCTCACGATTTAAGGTTTTCATTATTGATGAGTGCCAGTTACTGAAGGCTGA GACATGGGCGAGCCTTTCGAATAACCTAGAGAACCTTTCTGAGCATGTGGTTTTTGTTATGATCACTCCTGATTTAGATA AACTTCCTCGAAGTGCAGTTTCCCGGGCTCAGACCTATCACTTTCCGAAGGTTAAAGATGCTGACATTGCATGCAGATTA GAAAAGATTTGTGTTGAAGAAGGTCTTGATTTTGATCAGGCTGCTTTAGACTTCATTGCTGCAAAATCCTGTGGTTCTGT TAGGGATGCAGAAATGATGCTTGATCAGCTGAGTTTGCTTGGTAAAAAGATTAAACTTTCATTAGTTCATGAGCTTACTG GGATTGTTTCTGATGATGAATTGCTCAATTTGCTGGATCTGGCTTTGTCATCTGACACTTCAAATACAGTTATAAGAGCT CGAGAGCTGATGAGATCCAGGATAGGTCCTTTGCAACTTGTATCACAGCTGGCAAATCTCATTATGGACATCCTTGCAGG GAAATGTGTAGATGGTGGTTCTGAGGTCAGAAGTAAATTTTCTGGTAGATATACCTCGGAAGCCGACCTTCAGAAATTAA GCCGGGCAGTGAGAATACTTTCTGAAGCTGAGAAACAGTTAAGAATTTCAAAAAACCAAACAACGTGGTTAACTGTAGCT CTACTGCAGTTAAGCTCTGTAGATTATCCTTCCGTGGATGTAAATGATACAAAGTTGTGTTTGAGAGAGCAGAGCATGGA GCATCTTGCTACAGGTCAGTGTGGCGACAAGTCATATAGATTAGGAGTGCAGGAGGATCACAAAGGAACATTGGATGCCA TATGGTATAAAGCTACTGAGATATGTCAATCTGGTCAGCTCAAAACTTTTCTCAGGAAGAAGGGGAAGTTGTCTTCACTT CATGTAGATCGCAGTACATCATGGCTTGCTATCGCCGAGTTGGAGTTCCGCCATCGGCACCATGTATCCAAGGCTGAGAA GTCATGGAAATTGATTGCAAGTTCGTTGCAGTTCATATTGGGTTGTAACATTGAGCTGAGGATCACTTATGAACCCCGTG CTTCTGATTCCAAGTATGCCAAACTGAAGAGGTCATCTTTCAGTATCTTTAGCTGTTCACGCAGAGCACAACAGAAATCA TTATCGTCTAATGGAAGCGAATCAGATTATGCTGATCACGTCTCTCAAAATCCCATGATAAAGGATAAAACTCTAACTTC CTCTGATTACCATGGAATGGATGTTGTAACAACTTTGAGAAGCTGCAAAGGGAACTTGCTGAGCTCAGGAGAAAGATTTT TGAATAGGTCTTTCCAAGAGAATATGGGGACATCATGTTCTGAAGTTGATTCCTCTAAGGAAAAAGGAAACAGATGTGCA CATTTAGTTCCATCAGTCCTTGAGTCAGATTATCAGTCCAACTGTTTTCCTCAAAATCTCTGGCTTCAAAAGAAGTTCCG TTCTTCATATTCATCCAAGTCAACTTTGCAGGGTATCTAA
Protein sequence (LotjaGi1g1v0230800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGRRHSVDIPISKTLVALRRVRSLRDPSTNSICKRSSLIDNVQWENGSGNGISLLFPEASRECDSDDNVDFTSRNLGFK GQRVQDATDFKLDCGLLGSRLKPSGMSFQDSQHNDDELVYSNPNRQCSSGNKSSSESCDSNHGGEGLDLASIEPHSNNFR DGESCFIATAKSSQLGRIDHSRSDKKSLRANQVRPAQVEGGIVNHVGNPCLSVHDDFSPHSTSVDINQDFDVLDNNDNGC GISFCWSKSPRFRESNLYSKIEDRPLILHQVDDTDLHGDRNMRHDGGDISPTLETPRSLSMKFRPNSFSDLVGQNVVVRS LLGAISRGMIASFYLFHGPRGTGKTSASRIFAAALNCLSVEGQKPCGLCRECVLFFSGRSKEVKEVDSVRINRTDQVKSL VKNACIPPISSRFKVFIIDECQLLKAETWASLSNNLENLSEHVVFVMITPDLDKLPRSAVSRAQTYHFPKVKDADIACRL EKICVEEGLDFDQAALDFIAAKSCGSVRDAEMMLDQLSLLGKKIKLSLVHELTGIVSDDELLNLLDLALSSDTSNTVIRA RELMRSRIGPLQLVSQLANLIMDILAGKCVDGGSEVRSKFSGRYTSEADLQKLSRAVRILSEAEKQLRISKNQTTWLTVA LLQLSSVDYPSVDVNDTKLCLREQSMEHLATGQCGDKSYRLGVQEDHKGTLDAIWYKATEICQSGQLKTFLRKKGKLSSL HVDRSTSWLAIAELEFRHRHHVSKAEKSWKLIASSLQFILGCNIELRITYEPRASDSKYAKLKRSSFSIFSCSRRAQQKS LSSNGSESDYADHVSQNPMIKDKTLTSSDYHGMDVVTTLRSCKGNLLSSGERFLNRSFQENMGTSCSEVDSSKEKGNRCA HLVPSVLESDYQSNCFPQNLWLQKKFRSSYSSKSTLQGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 841 | 834 | 0.0 | – | |
| PANTHER | 8 | 841 | 834 | 0.0 | – | |
| MobiDBLite | 123 | 153 | 31 | - | – | |
| MobiDBLite | 123 | 141 | 19 | - | – | |
| MobiDBLite | 277 | 296 | 20 | - | – | |
| TIGRFAM | 298 | 644 | 347 | 1.1E-97 | ||
| SUPERFAMILY | 300 | 520 | 221 | 8.26E-38 | ||
| Gene3D | 302 | 531 | 230 | 2.9E-70 | – | |
| Gene3D | 306 | 470 | 165 | 2.9E-70 | – | |
| CDD | 312 | 462 | 151 | 3.14676E-6 | – | |
| Pfam | 314 | 471 | 158 | 1.2E-23 | – | |
| CDD | 471 | 534 | 64 | 1.95001E-16 | – | |
| SUPERFAMILY | 535 | 645 | 111 | 1.62E-7 | ||
| Coils | 613 | 633 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-directed DNA polymerase activity | Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Cellular component | DNA polymerase III complex | The DNA polymerase III holoenzyme is a complex that contains 10 different types of subunits. These subunits are organized into 3 functionally essential sub-assemblies: the pol III core, the beta sliding clamp processivity factor and the clamp-loading complex. The pol III core carries out the polymerase and the 3'-5' exonuclease proofreading activities. The polymerase is tethered to the template via the sliding clamp processivity factor. The clamp-loading complex assembles the beta processivity factor onto the primer template and plays a central role in the organization and communication at the replication fork. |
Expression pattern of LotjaGi1g1v0230800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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