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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0225500 |
| Transcript ID | LotjaGi4g1v0225500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT4G24790.1 AAA-type ATPase family protein; Swiss-Prot: sp|F4JRP8|STIL2_ARATH Protein STICHEL-like 2; TrEMBL-Plants: tr|A0A0B2RQ22|A0A0B2RQ22_GLYSO DNA polymerase III subunit gamma/tau; Found in the gene: LotjaGi4g1v0225500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53104289..53109938) extracted from Lotus japonicus Gifu genome v1.2.
CCACTTTCTGTAAAAGTGTTGATTCCCTCACCCACCTGCACCTGCACTGCCACAGTTTCTGCATCTCCTTGAAAGGGAAC AGAACAAAACAAGCTTCTAAAAAAACCAAAAGTTACCCTCTTTATTCACCAGAGTGACACAAACACACCTGACACTTGTT CTTGTCACAACATTAACCAATGCCATGCCTAACACCCCCTTGCATTTATTACTGTTTTACCATTTTGCCACTACATTTCC TTCTACTTCCCTTTCTCCCCATTGTACTGTTCTTCAATGCTCACCAGCAACAAGCTCCCCCATCAAGACAAAGATTGAGT TTTTCAACTACCCATTTTCTACGTTACTTGATTCAAGCTTCAAGGTGTTTTTGATTTGTCTTTTTTCATTTCATTTTCTG TCGTTTCATGTTGTCTGTTTCCATCTCCAAGATCTTTTATTTTATTTTTTTATACAATAATGTTTTGAAAACCCAAGTTC TCTCCTTCTTCCCTCGTCATGTTTTACTTCTAATACGGACTGAATGGAAATAGTACAACATTTTTCTGTAGAGTTCAGGT AAGAACCAACTTAAATGGGTTTGCTTTTGATTCTTGCTTGATCACAAGTACAACATTTTTCCCACTTGCCTATTTTCTTT GTTCAATCTCTGATGTTTATTTCCCGCTAGAATGGACCTGCACAGTTCTCAGTAGGAAAGGAGGTAGATTTTTTCCCATT TTAATCATCATTATCATTAGTGCTATATATTTCATTATTAAACACTGCTTCTGTTTTTGACCCCCCAAGTTTCATTTTTG TGCTTTTTTTTGGGAATGTAGTAAAGGGTTATGATTTCATGCTTATTATCTGGGGTATGGTGGTTTACTACTTTACTGGT TGTTACCTGTTTCATGATTTCATTCACTCTCTCCTTTTTTTCTGTGCCAAGTTTATTTTTTGATATTTTTGGCTTTACAT TTTGATGTTTTTTTTTTCTCTTGTAGGTTGATTTGATTTGTTCTATTTCTGGTGGACAGGTTCTGATTTTGTAAGAATAA GACAGTGATGGATGGCAGGAGGCATTCTGTTGATATTCCTATTTCTAAAACCCTTGTAGCACTGAGAAGAGTCAGGTCAT TGAGGGATCCATCAACCAATGGTGTTAGCAAGCTCTCTCCTGTGGTTGATGATGGACATTGGGGAAATGGTTCTGGTAAT GGGGTTTCTCTGAGGTTCTTGAATGCTTCTCACGCTTATGATTCTGAGTATAATGATTTTTTAAGATCAAAGAATTCAGA TTTTAAGGGGCAGAGAGAGCAGGATACTACTGATTTTGAATTGGATTGTCGCCTGTTGAACTCAAAGATGAACTATTGTG GGATCTCATATCAGGATACTCAACATGATGATGTAGTTTACTCTAATCCTAAGCAACGGGGTATTTCTGGAAATAAATCA CCAAATGAAAGCTGTTGTAGTAATCTTGGAGGTAGAGGATTGGATTTGGCTTCCATGATACCTCATAGTAATCCTTTGAA GGATGAGGAATCACCCTATTTATCAAATGCCTTATCATCACAATTTGGGAGAGTAGATACCTCAAAGTCAACCAGGAAAT CGCTACGCAAGAATAAAGTGAAACCATCTGAATTTATGAGTGATAATGAAAGCTATTTAGGGAGTCCATGCCTTTCTGTT CATAATGACTCTGCACTTATAACTCAAGATATTGATATTTTAGTTGATCACCGTGGATGCGGATTAAGCTGTTGTTGGTC AAAGTCCCCTAGGTTTAGAGAATCAAATCATTATTCTGAAAATGAAGACCTTCCCTTGATATTGCAAAATGTCAATGAGA CAGATTTTCGTGGGCATCAAAGCATGAGAAACATTGGTGGTGAAGTTAGTCCAACTTTGGAAACTCCTAGAAGTTTATCT ATGAAATTTAGGCCGAAACGTTTCTATGATTTGGTTGGACAGAATATGGTGGGAAAGTCTCTTTTGGGTGCCATCTCCAG AGGAAGGATAGCGTCATTTTATCTCTTCCATGGCCCCCGAGGTACCGGCAAGACCTCTGCATCGAGGATATTTGCTGCTG CACTGAATTGCCTCTCCCTTGAGGAGCAAAGGCCATGTGGTCTGTGTAGAGAATGCGTTTTGTTCTTTTCTGGAAGAAGT AAAGATGTTAAGGAAGTGGACTCTTTGAGAATCAATCATGCTGATAAGGTTAAATCCCTTGTGAAGAATGCATGCTTCCC TCCAGTTTCCTCGCGTTTTAAGGTGTTCATAATTGATGAATGCCACTTGTTGCATGGGGAAACATGGGCGAGTCTTTTGA TTAGCCTAGAAAATGTTTATCAACATGTGGTTTTTGTGATGATCACTCCAGATTTGGATAAGCTTCCTCGTAGTGCAGTT TCCCGGGCTCAGAGGTACCACTTCACAAAGATTAAAGATGCTGACATTGCAAGCAGGTTGAAAAAAATCTGTGCTGAAGA AGGTCTTGAATATGAACAAGATGCTTTGGATTTTATTGCTGGTAAGTCCTGTGGTTCCCTTAGGGATGCAGAAATGATGC TTGATCAGCTGAGTTTGCTTGGTAAAAAGATTACAACTTCCTTAGTTTACGAGCTTGTAAGTGTTGTGCTTTGTTGTATA CATATATGTCCTTGAAACTTTCTTCACTTTTTTCCTTTTTCTGAGCTTTATGTCTTTCCCTTTGTTGTTCTTCAGACTGG GGTCGTTTCTGATGATGAATTGCTTGATTTGCTGGACATGGCTTTGTCATCTGATACTTCAAATACAGTTAAAAGAGCCC GGGAGCTGATGAGATCAAGGATAGATCCCTTACAACTTATATCACAGCTGGCAAATATTATCATGGATATTCTTGCAGGG AAATGTGAACTTGGTTGTTCTGAAATCAGAAGAAGATTTTCTAGTAGACATACCTGTAAGGGCTTTCAAGTATTTAGGTT GTTTTGGAATAGCTTGTTTGCACTTATCTTATAGCATAAGTGCTTATGCAAGTGTTTGGGTAACCAGCTTATGAAAATAG CTTATAACCTATCTATGAGTTGTTTTTAGCTTATTTTCAGAAACTCCTCTAATGATCTTATGAATAAATGCTGATACCTA TCTATAAGCTAATTTGAACTTATTTCAATAAGCATCTCAAATTAGCTTATGAATAACATAAGCGCTTATTGCTATAAGCA TTTTATTAAGTTACTTATCCAAAATGCATTCTAAATGTATAATATATGTTATATAATATAATATCTTAATTTTTTTAGCT TTGAGTGTATAAAATTGGATGTTTGATACTTTGATTTTCATAGCAGTTCATACTTGTGTTTCACCTTGTAAACTCTTCCG CTTGTATCTTATTTCTGCTGTCTGACTGGTTATTTTCTCCATCATAGCGGAAGCGGACCAGCAGAAACTTAGCCATGCAT TAAAAATACTCTCTGAAACGGAGAAGCAATTGAGAATTTGTAAGAATCAGACAACATGGTTCACGGCAGCTCTTCTACAG TTAAGTTCTATAGAATGTTCATCTGTGGATGCAAATGATACCAAGTTGTTCATGAAAGCTGCTTCAAGTATAGGTGAGCT TGAGTGACTTCTTTCTCCGTTTTTTTATTAATTCCCCATCTTCCTTAACAAGTGTGTTAGGATAGAGTTAGCTGTATTGG AGTGGTTTGGTCTTGTTGAATATTCTATTCTAAGCTTGTCTTAAACTGGTGCAGATGGTGATTTGTGCAGTGCATCTTCT ACAGGGGAGAGCTTGAAGCATCTTGCTACAGGTCAGTGTGATGAGAAGTCAAATAGATTAGGAGTCCAAGAGGATCACCA AGAGATATTGGATTCCATATGGCATCATGCTACAGAGATATGTCAATCTAGCAGGCTCAAGACTTTTCTCGGGAAGCAGG GGAAGTTGTCTTCAGTTTGTATTAATCAAGGTGCATATTTTTGTCTAGTGACTAATTTGCATTCATTGAAGTTTTTAGTA TCATTGTGTAATCTCTTCCTACCGTCATGATCTGTGTTTTTTGTGCTTTTTGTCCAAAGAAATGCTCATCCTCATAACAC ACTTCCTGACATGCTCCTTTCAGCACTTTATTATGTGTAATTCCATGTAGATGTAGGTCCCACCAATAGAATGGTATAGG TTATTTAAGGGGACCAACATTAGAAAAAAATAGAATTTTGTCAGGATTCTTTCTTTATCAAAGTTTTTGTTTAGATATTT TCTCATGAACTATTGTTTTAGTTGATTTCTTTTGAAGGAGTTTCCAGGACTAGGGAGTTTTCCTATCTCCGTTTACAATA AGAAAGATGGTTTTACAGCAATAATATTTATGATAGGATCAAATGTAGCTGCTCTTACAGAATCTTGATCAGCTTTTTTC ATATTCTTTGGCCTTGCACATTATGCGAACTACATATTGCACTTCTTTTTTGTTAGTGCATGTTTGGATACATGGTAGAA AACCACGATGAAGGCAAATTCACGGTGGACAGCCACAAAAGCTAAGGGAAGTTGCTTCTGTGATTTTGGCTCATAATGGT TTTTCACCGTGTATCCAAACATGCTTTTAGTGTCAATATATTGCACTCTTTTTCTCCTCAGTATAGTGAGTACTAATTAC CTACTAATTGAAAGGAGAAATTTCCAATTTTCAGGTCTTGCAGTTGTCGAGTTGGAGTTCCACCATCGTGACTATGTAGC TAGGGCTGAGAAGTCGTGGAAACAGATTGCAAGTTCCCTGCAATTCATGTTGGGCTGTAACATTGAGCTTAGAATCAATC ATGTACCTTGCGCTTCAGATTCTAAGTATGCTAAATTGAAGAGGTCATTCAATTTCTTTAGCTGTTCACGCAGAATTCTC GGAAAGTCATTATCATCTGATGAACAAGGAAGTGAATCAGACTATGCTGATCACACCTCACAAAAGCCCATGATGAAGGA TCAAGCTCTAACTTGTTCCTCTGATTGCGGATCTCGGGTGCCGCCTCTCGAGTCCTACCATGGAATGGAGGCTGTAACAA CTTTGAGAAGCTGTGAAGGGAATTTGCTAAGCTCAGGGAAAGTGTTATCGAATAGGGCGGGTGGTGAGACTCCGAGGATT TCTCTTAATAGAGTTGATTCTCTTAAGGAAGAGGGGTCCAATTATGAACATCTTGCTTCATCAACAACCCATGATTTAAA TAATCAATCTAAATGTTTTCCTCGAACCCTCTGGCTTCATAGAAAGTTCTCTTCTTCATATGCATCACAGCAAAAGGATT TTGTTTTATCCATCCCCAAGTACGAATGCTCAGAGTCCTATATTGTTTCCCAAAGCTCTAACGGCTGCACAAAAGCTGCT GAGGAAAAGTAGGTTGTTTTGCATTCGGATCACTATCTTTGTTTATATTGTTTGGTAGCATCTTAGTGTTTATTATATAA TCTATGCTAACAAATTCCTTTGCTCTGTTAATTTTTTTTGAGACTGCATATACAGTGTTGCATATGGTAATTGATTAGAA TAAGCTGAAATCTACATTCAACATGGGGATTGAATTTAATTGCTGATGAAAAGCCATCAAGATATATTGTTCATATTGAT AATGGGTATAACCTCTGCTTTCCTTCTGAGAGTGTATTTAGCATAAGGAA
CDS sequence (LotjaGi4g1v0225500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGCAGGAGGCATTCTGTTGATATTCCTATTTCTAAAACCCTTGTAGCACTGAGAAGAGTCAGGTCATTGAGGGA TCCATCAACCAATGGTGTTAGCAAGCTCTCTCCTGTGGTTGATGATGGACATTGGGGAAATGGTTCTGGTAATGGGGTTT CTCTGAGGTTCTTGAATGCTTCTCACGCTTATGATTCTGAGTATAATGATTTTTTAAGATCAAAGAATTCAGATTTTAAG GGGCAGAGAGAGCAGGATACTACTGATTTTGAATTGGATTGTCGCCTGTTGAACTCAAAGATGAACTATTGTGGGATCTC ATATCAGGATACTCAACATGATGATGTAGTTTACTCTAATCCTAAGCAACGGGGTATTTCTGGAAATAAATCACCAAATG AAAGCTGTTGTAGTAATCTTGGAGGTAGAGGATTGGATTTGGCTTCCATGATACCTCATAGTAATCCTTTGAAGGATGAG GAATCACCCTATTTATCAAATGCCTTATCATCACAATTTGGGAGAGTAGATACCTCAAAGTCAACCAGGAAATCGCTACG CAAGAATAAAGTGAAACCATCTGAATTTATGAGTGATAATGAAAGCTATTTAGGGAGTCCATGCCTTTCTGTTCATAATG ACTCTGCACTTATAACTCAAGATATTGATATTTTAGTTGATCACCGTGGATGCGGATTAAGCTGTTGTTGGTCAAAGTCC CCTAGGTTTAGAGAATCAAATCATTATTCTGAAAATGAAGACCTTCCCTTGATATTGCAAAATGTCAATGAGACAGATTT TCGTGGGCATCAAAGCATGAGAAACATTGGTGGTGAAGTTAGTCCAACTTTGGAAACTCCTAGAAGTTTATCTATGAAAT TTAGGCCGAAACGTTTCTATGATTTGGTTGGACAGAATATGGTGGGAAAGTCTCTTTTGGGTGCCATCTCCAGAGGAAGG ATAGCGTCATTTTATCTCTTCCATGGCCCCCGAGGTACCGGCAAGACCTCTGCATCGAGGATATTTGCTGCTGCACTGAA TTGCCTCTCCCTTGAGGAGCAAAGGCCATGTGGTCTGTGTAGAGAATGCGTTTTGTTCTTTTCTGGAAGAAGTAAAGATG TTAAGGAAGTGGACTCTTTGAGAATCAATCATGCTGATAAGGTTAAATCCCTTGTGAAGAATGCATGCTTCCCTCCAGTT TCCTCGCGTTTTAAGGTGTTCATAATTGATGAATGCCACTTGTTGCATGGGGAAACATGGGCGAGTCTTTTGATTAGCCT AGAAAATGTTTATCAACATGTGGTTTTTGTGATGATCACTCCAGATTTGGATAAGCTTCCTCGTAGTGCAGTTTCCCGGG CTCAGAGGTACCACTTCACAAAGATTAAAGATGCTGACATTGCAAGCAGGTTGAAAAAAATCTGTGCTGAAGAAGGTCTT GAATATGAACAAGATGCTTTGGATTTTATTGCTGGTAAGTCCTGTGGTTCCCTTAGGGATGCAGAAATGATGCTTGATCA GCTGAGTTTGCTTGGTAAAAAGATTACAACTTCCTTAGTTTACGAGCTTACTGGGGTCGTTTCTGATGATGAATTGCTTG ATTTGCTGGACATGGCTTTGTCATCTGATACTTCAAATACAGTTAAAAGAGCCCGGGAGCTGATGAGATCAAGGATAGAT CCCTTACAACTTATATCACAGCTGGCAAATATTATCATGGATATTCTTGCAGGGAAATGTGAACTTGGTTGTTCTGAAAT CAGAAGAAGATTTTCTAGTAGACATACCTCGGAAGCGGACCAGCAGAAACTTAGCCATGCATTAAAAATACTCTCTGAAA CGGAGAAGCAATTGAGAATTTGTAAGAATCAGACAACATGGTTCACGGCAGCTCTTCTACAGTTAAGTTCTATAGAATGT TCATCTGTGGATGCAAATGATACCAAGTTGTTCATGAAAGCTGCTTCAAGTATAGATGGTGATTTGTGCAGTGCATCTTC TACAGGGGAGAGCTTGAAGCATCTTGCTACAGGTCAGTGTGATGAGAAGTCAAATAGATTAGGAGTCCAAGAGGATCACC AAGAGATATTGGATTCCATATGGCATCATGCTACAGAGATATGTCAATCTAGCAGGCTCAAGACTTTTCTCGGGAAGCAG GGGAAGTTGTCTTCAGTTTGTATTAATCAAGGTCTTGCAGTTGTCGAGTTGGAGTTCCACCATCGTGACTATGTAGCTAG GGCTGAGAAGTCGTGGAAACAGATTGCAAGTTCCCTGCAATTCATGTTGGGCTGTAACATTGAGCTTAGAATCAATCATG TACCTTGCGCTTCAGATTCTAAGTATGCTAAATTGAAGAGGTCATTCAATTTCTTTAGCTGTTCACGCAGAATTCTCGGA AAGTCATTATCATCTGATGAACAAGGAAGTGAATCAGACTATGCTGATCACACCTCACAAAAGCCCATGATGAAGGATCA AGCTCTAACTTGTTCCTCTGATTGCGGATCTCGGGTGCCGCCTCTCGAGTCCTACCATGGAATGGAGGCTGTAACAACTT TGAGAAGCTGTGAAGGGAATTTGCTAAGCTCAGGGAAAGTGTTATCGAATAGGGCGGGTGGTGAGACTCCGAGGATTTCT CTTAATAGAGTTGATTCTCTTAAGGAAGAGGGGTCCAATTATGAACATCTTGCTTCATCAACAACCCATGATTTAAATAA TCAATCTAAATGTTTTCCTCGAACCCTCTGGCTTCATAGAAAGTTCTCTTCTTCATATGCATCACAGCAAAAGGATTTTG TTTTATCCATCCCCAAGTACGAATGCTCAGAGTCCTATATTGTTTCCCAAAGCTCTAACGGCTGCACAAAAGCTGCTGAG GAAAAGTAG
Protein sequence (LotjaGi4g1v0225500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGRRHSVDIPISKTLVALRRVRSLRDPSTNGVSKLSPVVDDGHWGNGSGNGVSLRFLNASHAYDSEYNDFLRSKNSDFK GQREQDTTDFELDCRLLNSKMNYCGISYQDTQHDDVVYSNPKQRGISGNKSPNESCCSNLGGRGLDLASMIPHSNPLKDE ESPYLSNALSSQFGRVDTSKSTRKSLRKNKVKPSEFMSDNESYLGSPCLSVHNDSALITQDIDILVDHRGCGLSCCWSKS PRFRESNHYSENEDLPLILQNVNETDFRGHQSMRNIGGEVSPTLETPRSLSMKFRPKRFYDLVGQNMVGKSLLGAISRGR IASFYLFHGPRGTGKTSASRIFAAALNCLSLEEQRPCGLCRECVLFFSGRSKDVKEVDSLRINHADKVKSLVKNACFPPV SSRFKVFIIDECHLLHGETWASLLISLENVYQHVVFVMITPDLDKLPRSAVSRAQRYHFTKIKDADIASRLKKICAEEGL EYEQDALDFIAGKSCGSLRDAEMMLDQLSLLGKKITTSLVYELTGVVSDDELLDLLDMALSSDTSNTVKRARELMRSRID PLQLISQLANIIMDILAGKCELGCSEIRRRFSSRHTSEADQQKLSHALKILSETEKQLRICKNQTTWFTAALLQLSSIEC SSVDANDTKLFMKAASSIDGDLCSASSTGESLKHLATGQCDEKSNRLGVQEDHQEILDSIWHHATEICQSSRLKTFLGKQ GKLSSVCINQGLAVVELEFHHRDYVARAEKSWKQIASSLQFMLGCNIELRINHVPCASDSKYAKLKRSFNFFSCSRRILG KSLSSDEQGSESDYADHTSQKPMMKDQALTCSSDCGSRVPPLESYHGMEAVTTLRSCEGNLLSSGKVLSNRAGGETPRIS LNRVDSLKEEGSNYEHLASSTTHDLNNQSKCFPRTLWLHRKFSSSYASQQKDFVLSIPKYECSESYIVSQSSNGCTKAAE EK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 833 | 826 | 0.0 | – | |
| PANTHER | 8 | 833 | 826 | 0.0 | – | |
| MobiDBLite | 176 | 200 | 25 | - | – | |
| MobiDBLite | 180 | 195 | 16 | - | – | |
| TIGRFAM | 289 | 635 | 347 | 1.0E-103 | ||
| Gene3D | 293 | 521 | 229 | 5.1E-74 | – | |
| Gene3D | 297 | 461 | 165 | 5.1E-74 | – | |
| CDD | 303 | 453 | 151 | 7.97504E-7 | – | |
| Pfam | 305 | 462 | 158 | 1.9E-24 | – | |
| SUPERFAMILY | 313 | 509 | 197 | 3.71E-39 | ||
| CDD | 462 | 525 | 64 | 7.46306E-20 | – | |
| SUPERFAMILY | 532 | 632 | 101 | 4.0E-7 | ||
| MobiDBLite | 804 | 823 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-directed DNA polymerase activity | Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Cellular component | DNA polymerase III complex | The DNA polymerase III holoenzyme is a complex that contains 10 different types of subunits. These subunits are organized into 3 functionally essential sub-assemblies: the pol III core, the beta sliding clamp processivity factor and the clamp-loading complex. The pol III core carries out the polymerase and the 3'-5' exonuclease proofreading activities. The polymerase is tethered to the template via the sliding clamp processivity factor. The clamp-loading complex assembles the beta processivity factor onto the primer template and plays a central role in the organization and communication at the replication fork. |
Expression pattern of LotjaGi4g1v0225500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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