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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0058700 |
Transcript ID | LotjaGi3g1v0058700.4 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Small nuclear ribonucleoprotein family protein; TAIR: AT2G03870.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9SI54|LSM7_ARATH Sm-like protein LSM7; TrEMBL-Plants: tr|I3SC15|I3SC15_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0058700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:6170993..6174689) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTGAGTAGTTTCTTTCTCTTTCTCCATTCATCACCTTTCTTTCACTGTGATTAATGAATGCATCATTCATTCTTCTG CAAAATAAATAATCTCAGTTTTTGATTTGGGGTTTTCTGATTGATTTCATCAGTCAGGGAGGAAAGAAACGGTTCTGGAC TTGGCCAAATTCGTTGACAAAGGTGTTCAAGTTAAGCTCACTGGTGGCAGACAAGGTGTGTGTCACCCTAATTCATTCTT CTTTTTAGGTTTTCTCATCAGATTCAGTTATTTTCGTGCTGTCTGTCATTGTGGTGGTCTGTGTTTTTTATTTGCTTTTA ATGTTTAATTCTGGGTTTCTCTGTTGTGTTCTTGATTGATTTTTTTAATATTATGATTTAAGAAACCTTTAGTATGTATG TTAGTGTTAAATGAACTCACAAGTAATGGTGTTTAAGTGTAATTGTAGCTGATTTTCTTACTTTCATATTGAACAATTTT GGAGGTGTTACTGGTGAGCATTGGGTGTGATCTTTGGAACAATTTTTTGTGGCAGCATGAACCTTATGCAACTCTTTGCT GCAATTGACTGGATCCTAATGTTTACATCTTTAAGAGTGTCTCTTTTCCCTTAAAATTTGCTATAGGATGAGGTTATGTT TATAGCCTCCCTTTTGTGTTTCCTCTACTGCTGTTTCAAGGGGTTTGATCTTTCTGATAAGCAAGAAGATATGACTGCCT TGATGCACTCTTGAGTCTTGACCTTTACTTATGTTCTTTGCATTTTGACCTTTAGCAAATTAACAAAACAATAACCCCCA TAACCACTATTCCTCCTTTTCCCATTTGCTTTTTTTTACTAGTGTTCACTTGGGTAATGTGGGGTCTGACGTTTCAACTT GTTGGATTTCAGTGACAGGAACTCTGAAAGGGTATGACCAGTTACTAAACCTTGTCCTGGATGAAGCTGTTGAATTTCTG AGAGGTAAATTCCAAATATTACCAGCCCCTTGTTTTCACATATAGTGACTCAATGATAAATATCTTTTAGCATTTATATA TTGCGCGAATATTATGCCCGTGACTTCAGTTTTCTGACAGCATGTTTAAGTGAGATGGGTTTTTTGGACGGGTAGTTGGA GAGGGAAATTTAGGGCCCCGTGTTTTGTATTTTTTAAAAATATTTTTTTATTTTTTAAATATATGATGCTTAGATAAGCT TTTCAAAGTAAAACAAACCGAAAAAGCAGTTTAGTGCTTTTCTTAAAAGGTAGAAAAGTAGCTTGTAAGAGAGGTATATG ATAAAAGGGCTTTTTAACAAAGATTATCCAAGCACCTTTATTAACTAAAGATTAGATTTATGTATTTTTTTTCCCTTTTT CATGGTCAGTTTTCTGCTGTCCAAAAATTTCTTGCTTATTTCGCAAAATTATCTTAGTACTAAAAGGGCCTTTGCCAACT CATGAAAGCCTGACTTAAAAATGACAAGCTTTATTAAAATTTTTCAACAGCTAAAAGGACCAAAATTCATACTTCTTTAA CTCTATGGAGTTGATAATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAACTAGT AAAGCGACACAACATCTTTATGATCACCTGCTTGAAAGGACAATTCCTCAACGAAACTTACATGAACAAAGAAGCCATGT CAGTGCACCTTTTCATATAATTATTATATTTCATTGATAAATTCTAGTGTGAATCCTCAAACAACATTATTCATATTTCC ATACATGCAACAAAACCTTTCATGTATAGTATAATGAGGTCTATCATTTTGATGTGATTTTATAGTAATGTAAATACGAT CATTGTAGACTACTCCAACTAATTGGTAACATAACTAAAGAAAAACTGTCAATACCCGATACTGTATTTTAAGAATTCAA GTATGTTTTGTTTGCTTAATACTACTTAACTTCTTAAACTAATGGGCTTCCATTATACTTGATGATGGAGTCAACAGTGC CCTTTGCAAGGAAACTATTTGCATAAGAACATCTTTACTATTTTGTTTCTAGAAATAGAGTTGAATAGTTAAATCTTTTA TTAAACGTAAGAAAATCTTTACTTATTCTTTTATAATATATTCCATTTCAATTCTTAACCAAATTCTGTGGTACTTTGTT TTGCTCTGTAGATCCTGATGATCCACTGAAAACTACAGCTCAGACCAGAAGTCTTGGCTTAATTGTAAGTTCCTTTCTTT TCCCTGTAATTTATCTAAAGCATTAATTACCATCTTAAAATCAAATGCTGAAATTTAATTTGGAATTTGGATGAATGAAT GGCTGGTCTATTTTATCAGAATGCTGCTAGATTGTTTTCTTAATCAATTAGTTGTTGCGGTTTGGCTCTTCTTTAGAGGG TAAAATAAGTTGCTATAGTCATTGATTAGTAATTCAGCTGGTGAGATTTAAACAACTTCAGTGTTTGTCATATAAATACA TGCATGTGGTCACTATTTGAACCGTTGGTTTTAATATCAATGGCTATACGCCTATGCCTAATATCAATAAGTTAGCTTGT CATGACTTGGGCCAGATGAGTAGATGAAGAAGGAGAAGCATTTGTCAATTGGGACTGATCAAAATTCTTGTTTGTATATA ACTTTATTGGGAAGAAATAAAATTGTAAGTTAAGAACCTGAAATTGCTGTTTTATATTTCAAATGACTATGACTAAACTT TTACAGTCTTGTCACATGAAGATCTGTGACAAAAAAGGGCCTGGGAGCTTTGTTTTGTGATATTCAAGTTCCCAAACTTG AAATTTGTTTTGTTGCACATTTGGGGGTCTGTTAATGCTAATAGTTTATGCCCTATATTTTACAAAACTTTGGTTCGGAT ACTTTAAATGCCATACTGCAGCGAAATCCTGTGTTTTGCTTCTATTTCTGCGGGTTCCTGGGGCTACTTATTGATGATCA AGCATCACGCATCATTTTCTTTTGAAAGCTGGAAAAAAATGAAAATGGTTAACCTTTATTGTTAGGTACTCTGGTAGCTT AACTTTAAACACACGAGTATCTGTATCTCAGATATTGATACAGGAAAACCATAGGCAGCTCCTGTATATTATTGTCAGCT TACTTTATCATGTCTGAGAAGGTTTATAGGGATAGGGGGAGACATAAGAAAAGGTGGAAATTTTGTTCCAATGTAGATGT ATCTCCCAGAAACTATATTTCCTCTCTTTTAATCCCTTCATAGTAATACAAACAAGGCAAAAAGCTAATAAGACCATTTT TGGCAATTTCTGTGTGTTTAGTTGAAACTTGCAAGTAATGAAATTATAAAAGCCGTTTTTGTGAAAAAGAGTGATGATTA GGTGACTTTTGTGATGGTTGGACATGTTTAATGTTTCTTGAGTGTGAAAAGCAGTTTTCCTCCTTTACAAGTGAGCTAAA TTTGAAATTTCATAATTCATACTGGCAATGGAAATGCCTATTATGTATAAAAAAGCATTTCCCGTGAGTTTGAAGTCACA CAACATGACCAAAAACTTTATTTGAATGATTATGGTCTGAATTCATTGGGCTAAAAACTTACACTGCTTTTGTTGTGCAC TGTGCAGGTTTGTAGAGGAACTGCTGTCATGCTTGTTTCCCCAACTGATGGTACAGATGAGATTGAGAACCCCTTTATTC AGCCCGATGGGGCCTAA
CDS sequence (LotjaGi3g1v0058700.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGGGAGGAAAGAAACGGTTCTGGACTTGGCCAAATTCGTTGACAAAGGTGTTCAAGTTAAGCTCACTGGTGGCAG ACAAGGAACTCTGAAAGGGTATGACCAGTTACTAAACCTTGTCCTGGATGAAGCTGTTGAATTTCTGAGAGATCCTGATG ATCCACTGAAAACTACAGCTCAGACCAGAAGTCTTGGCTTAATTGTTTGTAGAGGAACTGCTGTCATGCTTGTTTCCCCA ACTGATGGTACAGATGAGATTGAGAACCCCTTTATTCAGCCCGATGGGGCCTAA
Protein sequence (LotjaGi3g1v0058700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGRKETVLDLAKFVDKGVQVKLTGGRQGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTAQTRSLGLIVCRGTAVMLVSP TDGTDEIENPFIQPDGA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 90 | 90 | 1.6E-27 | – | |
PIRSF | 1 | 96 | 96 | 4.5E-41 | – | |
PANTHER | 2 | 97 | 96 | 8.5E-56 | – | |
PANTHER | 2 | 97 | 96 | 8.5E-56 | – | |
CDD | 5 | 91 | 87 | 7.51325E-55 | ||
SMART | 9 | 80 | 72 | 3.6E-18 | ||
Pfam | 10 | 80 | 71 | 3.1E-17 | ||
SUPERFAMILY | 11 | 83 | 73 | 5.29E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
Biological process | Nuclear-transcribed mRNA catabolic process | The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells. |
Expression pattern of LotjaGi3g1v0058700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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