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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2573940 |
| Transcript ID | Lj4g3v2573940.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: U6 snRNA-associated Sm-like protein LSm7-like [Glycine max] gi|356512406|ref|XP_003524910.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 94 | 94 | 1.00E-45 | – | |
| PIRSF | 1 | 94 | 94 | 1.70E-38 | ||
| CDD | 5 | 94 | 90 | 2.64E-50 | – | |
| Gene3D | 5 | 87 | 83 | 2.60E-23 | – | |
| SMART | 9 | 82 | 74 | 6.20E-21 | ||
| Pfam | 10 | 82 | 73 | 6.10E-19 | ||
| SUPERFAMILY | 11 | 86 | 76 | 5.61E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Biological process | Nuclear-transcribed mRNA catabolic process | The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells. |
Expression pattern of Lj4g3v2573940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2573940.1, powered by CORGI.
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