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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0058700 |
| Transcript ID | LotjaGi3g1v0058700.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small nuclear ribonucleoprotein family protein; TAIR: AT2G03870.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9SI54|LSM7_ARATH Sm-like protein LSM7; TrEMBL-Plants: tr|I3SC15|I3SC15_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0058700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:6170653..6174840) extracted from Lotus japonicus Gifu genome v1.2.
TAAAAAAAAAGTAGCAAGCCCAGCCAACGTCTCAGGCTCAGCCGCAAGGTACTTACTTACTTTCCGTCACTGGCACTGCA ATCTATTTCTATCAAACGACGACGAGACGCATAAATAATCTCTCTTCTTTGTATCAGACAGACAGACAGACATGGTGAGT AGTTTCTTTCTCTTTCTCCATTCATCACCTTTCTTTCACTGTGATTAATGAATGCATCATTCATTCTTCTGCAAAATAAA TAATCTCAGTTTTTGATTTGGGGTTTTCTGATTGATTTCATCAGTCAGGGAGGAAAGAAACGGTTCTGGACTTGGCCAAA TTCGTTGACAAAGGTGTTCAAGTTAAGCTCACTGGTGGCAGACAAGGTGTGTGTCACCCTAATTCATTCTTCTTTTTAGG TTTTCTCATCAGATTCAGTTATTTTCGTGCTGTCTGTCATTGTGGTGGTCTGTGTTTTTTATTTGCTTTTAATGTTTAAT TCTGGGTTTCTCTGTTGTGTTCTTGATTGATTTTTTTAATATTATGATTTAAGAAACCTTTAGTATGTATGTTAGTGTTA AATGAACTCACAAGTAATGGTGTTTAAGTGTAATTGTAGCTGATTTTCTTACTTTCATATTGAACAATTTTGGAGGTGTT ACTGGTGAGCATTGGGTGTGATCTTTGGAACAATTTTTTGTGGCAGCATGAACCTTATGCAACTCTTTGCTGCAATTGAC TGGATCCTAATGTTTACATCTTTAAGAGTGTCTCTTTTCCCTTAAAATTTGCTATAGGATGAGGTTATGTTTATAGCCTC CCTTTTGTGTTTCCTCTACTGCTGTTTCAAGGGGTTTGATCTTTCTGATAAGCAAGAAGATATGACTGCCTTGATGCACT CTTGAGTCTTGACCTTTACTTATGTTCTTTGCATTTTGACCTTTAGCAAATTAACAAAACAATAACCCCCATAACCACTA TTCCTCCTTTTCCCATTTGCTTTTTTTTACTAGTGTTCACTTGGGTAATGTGGGGTCTGACGTTTCAACTTGTTGGATTT CAGTGACAGGAACTCTGAAAGGGTATGACCAGTTACTAAACCTTGTCCTGGATGAAGCTGTTGAATTTCTGAGAGGTAAA TTCCAAATATTACCAGCCCCTTGTTTTCACATATAGTGACTCAATGATAAATATCTTTTAGCATTTATATATTGCGCGAA TATTATGCCCGTGACTTCAGTTTTCTGACAGCATGTTTAAGTGAGATGGGTTTTTTGGACGGGTAGTTGGAGAGGGAAAT TTAGGGCCCCGTGTTTTGTATTTTTTAAAAATATTTTTTTATTTTTTAAATATATGATGCTTAGATAAGCTTTTCAAAGT AAAACAAACCGAAAAAGCAGTTTAGTGCTTTTCTTAAAAGGTAGAAAAGTAGCTTGTAAGAGAGGTATATGATAAAAGGG CTTTTTAACAAAGATTATCCAAGCACCTTTATTAACTAAAGATTAGATTTATGTATTTTTTTTCCCTTTTTCATGGTCAG TTTTCTGCTGTCCAAAAATTTCTTGCTTATTTCGCAAAATTATCTTAGTACTAAAAGGGCCTTTGCCAACTCATGAAAGC CTGACTTAAAAATGACAAGCTTTATTAAAATTTTTCAACAGCTAAAAGGACCAAAATTCATACTTCTTTAACTCTATGGA GTTGATAATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAACTAGTAAAGCGACA CAACATCTTTATGATCACCTGCTTGAAAGGACAATTCCTCAACGAAACTTACATGAACAAAGAAGCCATGTCAGTGCACC TTTTCATATAATTATTATATTTCATTGATAAATTCTAGTGTGAATCCTCAAACAACATTATTCATATTTCCATACATGCA ACAAAACCTTTCATGTATAGTATAATGAGGTCTATCATTTTGATGTGATTTTATAGTAATGTAAATACGATCATTGTAGA CTACTCCAACTAATTGGTAACATAACTAAAGAAAAACTGTCAATACCCGATACTGTATTTTAAGAATTCAAGTATGTTTT GTTTGCTTAATACTACTTAACTTCTTAAACTAATGGGCTTCCATTATACTTGATGATGGAGTCAACAGTGCCCTTTGCAA GGAAACTATTTGCATAAGAACATCTTTACTATTTTGTTTCTAGAAATAGAGTTGAATAGTTAAATCTTTTATTAAACGTA AGAAAATCTTTACTTATTCTTTTATAATATATTCCATTTCAATTCTTAACCAAATTCTGTGGTACTTTGTTTTGCTCTGT AGATCCTGATGATCCACTGAAAACTACAGCTCAGACCAGAAGTCTTGGCTTAATTGTAAGTTCCTTTCTTTTCCCTGTAA TTTATCTAAAGCATTAATTACCATCTTAAAATCAAATGCTGAAATTTAATTTGGAATTTGGATGAATGAATGGCTGGTCT ATTTTATCAGAATGCTGCTAGATTGTTTTCTTAATCAATTAGTTGTTGCGGTTTGGCTCTTCTTTAGAGGGTAAAATAAG TTGCTATAGTCATTGATTAGTAATTCAGCTGGTGAGATTTAAACAACTTCAGTGTTTGTCATATAAATACATGCATGTGG TCACTATTTGAACCGTTGGTTTTAATATCAATGGCTATACGCCTATGCCTAATATCAATAAGTTAGCTTGTCATGACTTG GGCCAGATGAGTAGATGAAGAAGGAGAAGCATTTGTCAATTGGGACTGATCAAAATTCTTGTTTGTATATAACTTTATTG GGAAGAAATAAAATTGTAAGTTAAGAACCTGAAATTGCTGTTTTATATTTCAAATGACTATGACTAAACTTTTACAGTCT TGTCACATGAAGATCTGTGACAAAAAAGGGCCTGGGAGCTTTGTTTTGTGATATTCAAGTTCCCAAACTTGAAATTTGTT TTGTTGCACATTTGGGGGTCTGTTAATGCTAATAGTTTATGCCCTATATTTTACAAAACTTTGGTTCGGATACTTTAAAT GCCATACTGCAGCGAAATCCTGTGTTTTGCTTCTATTTCTGCGGGTTCCTGGGGCTACTTATTGATGATCAAGCATCACG CATCATTTTCTTTTGAAAGCTGGAAAAAAATGAAAATGGTTAACCTTTATTGTTAGGTACTCTGGTAGCTTAACTTTAAA CACACGAGTATCTGTATCTCAGATATTGATACAGGAAAACCATAGGCAGCTCCTGTATATTATTGTCAGCTTACTTTATC ATGTCTGAGAAGGTTTATAGGGATAGGGGGAGACATAAGAAAAGGTGGAAATTTTGTTCCAATGTAGATGTATCTCCCAG AAACTATATTTCCTCTCTTTTAATCCCTTCATAGTAATACAAACAAGGCAAAAAGCTAATAAGACCATTTTTGGCAATTT CTGTGTGTTTAGTTGAAACTTGCAAGTAATGAAATTATAAAAGCCGTTTTTGTGAAAAAGAGTGATGATTAGGTGACTTT TGTGATGGTTGGACATGTTTAATGTTTCTTGAGTGTGAAAAGCAGTTTTCCTCCTTTACAAGTGAGCTAAATTTGAAATT TCATAATTCATACTGGCAATGGAAATGCCTATTATGTATAAAAAAGCATTTCCCGTGAGTTTGAAGTCACACAACATGAC CAAAAACTTTATTTGAATGATTATGGTCTGAATTCATTGGGCTAAAAACTTACACTGCTTTTGTTGTGCACTGTGCAGGT TTGTAGAGGAACTGCTGTCATGCTTGTTTCCCCAACTGATGGTACAGATGAGATTGAGAACCCCTTTATTCAGCCCGATG GGGCCTAAGATTTGAAATGTATGCATGTGTAAAACAGCTAACTTTCATAAATGTATGCTAACCAAGCCAGTCTTCATTAT TGTGATCAGCTTGGTATTTGCTCTCCTATCCTGTGTTAACTTTTTTATCTTTTTTTGATTAAAACACATTGGTTTTTTGT TTTACTGACTAATATAAGATTTCATGGTTCCGTAGTTTACTTATATCTTGACACGTCATATTTGATAGGTAAAATTACAT ATATTATGGGCTAATGATGCATAGGTAGTTCATTTTGGCTGTTGTCCTATTCCAGGTACTTTCACGGTACTGGTATCCGT TCAGTACTTATATATCTTGCACCTCGTA
CDS sequence (LotjaGi3g1v0058700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGGGAGGAAAGAAACGGTTCTGGACTTGGCCAAATTCGTTGACAAAGGTGTTCAAGTTAAGCTCACTGGTGGCAG ACAAGTGACAGGAACTCTGAAAGGGTATGACCAGTTACTAAACCTTGTCCTGGATGAAGCTGTTGAATTTCTGAGAGATC CTGATGATCCACTGAAAACTACAGCTCAGACCAGAAGTCTTGGCTTAATTGTTTGTAGAGGAACTGCTGTCATGCTTGTT TCCCCAACTGATGGTACAGATGAGATTGAGAACCCCTTTATTCAGCCCGATGGGGCCTAA
Protein sequence (LotjaGi3g1v0058700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTAQTRSLGLIVCRGTAVMLV SPTDGTDEIENPFIQPDGA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 92 | 92 | 1.3E-31 | – | |
| PIRSF | 1 | 98 | 98 | 1.1E-44 | – | |
| PANTHER | 2 | 99 | 98 | 1.6E-59 | – | |
| PANTHER | 2 | 99 | 98 | 1.6E-59 | – | |
| CDD | 5 | 93 | 89 | 3.59097E-58 | ||
| SMART | 9 | 82 | 74 | 7.2E-23 | ||
| Pfam | 10 | 82 | 73 | 5.7E-21 | ||
| SUPERFAMILY | 11 | 85 | 75 | 2.25E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Biological process | Nuclear-transcribed mRNA catabolic process | The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells. |
Expression pattern of LotjaGi3g1v0058700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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