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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0067129 |
| Transcript ID | Lj0g3v0067129.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g30825, chloroplastic-like [Glycine max] gi|356508382|ref|XP_003522936.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 10 | 40 | 31 | 9.383 | ||
| TIGRFAM | 13 | 40 | 28 | 1.00E-04 | ||
| Pfam | 13 | 38 | 26 | 2.70E-04 | ||
| PANTHER | 33 | 744 | 712 | 0 | – | |
| PANTHER | 33 | 744 | 712 | 0 | ||
| ProSiteProfiles | 46 | 80 | 35 | 9.284 | ||
| Pfam | 49 | 78 | 30 | 0.0087 | ||
| TIGRFAM | 49 | 82 | 34 | 2.30E-06 | ||
| ProSiteProfiles | 81 | 111 | 31 | 6.171 | ||
| ProSiteProfiles | 115 | 149 | 35 | 8.155 | ||
| TIGRFAM | 120 | 150 | 31 | 4.10E-04 | ||
| Pfam | 120 | 147 | 28 | 6.90E-04 | ||
| ProSiteProfiles | 150 | 184 | 35 | 8.868 | ||
| Pfam | 154 | 182 | 29 | 0.0079 | ||
| TIGRFAM | 156 | 185 | 30 | 5.90E-04 | ||
| Pfam | 185 | 233 | 49 | 4.40E-10 | ||
| ProSiteProfiles | 185 | 219 | 35 | 10.907 | ||
| TIGRFAM | 188 | 218 | 31 | 2.70E-05 | ||
| Gene3D | 221 | 275 | 55 | 1.60E-07 | ||
| ProSiteProfiles | 223 | 257 | 35 | 11.52 | ||
| ProSiteProfiles | 258 | 292 | 35 | 5.842 | ||
| ProSiteProfiles | 327 | 357 | 31 | 6.062 | ||
| Pfam | 330 | 352 | 23 | 0.044 | ||
| ProSiteProfiles | 362 | 396 | 35 | 7.684 | ||
| Gene3D | 365 | 465 | 101 | 1.60E-07 | ||
| Pfam | 366 | 391 | 26 | 1.2 | ||
| ProSiteProfiles | 397 | 431 | 35 | 8.298 | ||
| Pfam | 402 | 429 | 28 | 0.004 | ||
| ProSiteProfiles | 432 | 462 | 31 | 8.1 | ||
| Pfam | 435 | 461 | 27 | 0.26 | ||
| TIGRFAM | 435 | 468 | 34 | 5.80E-04 | ||
| ProSiteProfiles | 503 | 537 | 35 | 10.282 | ||
| TIGRFAM | 506 | 539 | 34 | 5.90E-05 | ||
| Pfam | 507 | 549 | 43 | 1.70E-08 | ||
| ProSiteProfiles | 538 | 568 | 31 | 7.684 | ||
| TIGRFAM | 540 | 571 | 32 | 3.10E-04 | ||
| ProSiteProfiles | 572 | 606 | 35 | 9.701 | ||
| TIGRFAM | 574 | 607 | 34 | 1.70E-05 | ||
| Pfam | 574 | 604 | 31 | 0.0022 | ||
| ProSiteProfiles | 607 | 641 | 35 | 10.523 | ||
| Gene3D | 608 | 649 | 42 | 1.60E-07 | ||
| Pfam | 610 | 651 | 42 | 1.10E-10 | ||
| TIGRFAM | 610 | 642 | 33 | 2.40E-07 | ||
| ProSiteProfiles | 642 | 676 | 35 | 11.203 | ||
| TIGRFAM | 644 | 677 | 34 | 3.40E-06 | ||
| Pfam | 676 | 723 | 48 | 4.60E-13 | ||
| ProSiteProfiles | 677 | 711 | 35 | 12.989 | ||
| TIGRFAM | 680 | 712 | 33 | 2.40E-10 | ||
| ProSiteProfiles | 712 | 744 | 33 | 6.807 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Transcription factor TFIIH holo complex | A complex that is capable of kinase activity directed towards the C-terminal Domain (CTD) of the largest subunit of RNA polymerase II and is essential for initiation at RNA polymerase II promoters in vitro. It is composed of the core TFIIH complex and the TFIIK complex. | ||
| Biological process | Nucleotide-excision repair | A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts). | ||
| Biological process | Positive regulation of cyclin-dependent protein serine/threonine kinase activity | Any process that activates or increases the frequency, rate or extent of CDK activity. | ||
| Molecular function | Cyclin-dependent protein serine/threonine kinase activator activity | Binds to and increases the activity of a cyclin-dependent protein serine/threonine kinase. |
Expression pattern of Lj0g3v0067129.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0067129.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.