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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0079559 |
| Transcript ID | Lj0g3v0079559.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 33 | 33 | – | – | |
| Phobius | 1 | 20 | 20 | – | – | |
| Phobius | 21 | 28 | 8 | – | – | |
| Phobius | 29 | 33 | 5 | – | – | |
| Phobius | 34 | 611 | 578 | – | – | |
| PANTHER | 50 | 504 | 455 | 6.40E-159 | – | |
| ProSiteProfiles | 59 | 93 | 35 | 6.39 | ||
| Pfam | 90 | 121 | 32 | 5.80E-09 | ||
| ProSiteProfiles | 94 | 124 | 31 | 9.898 | ||
| TIGRFAM | 97 | 121 | 25 | 7.70E-06 | ||
| Pfam | 125 | 173 | 49 | 1.80E-17 | ||
| ProSiteProfiles | 126 | 160 | 35 | 13.066 | ||
| TIGRFAM | 128 | 162 | 35 | 1.40E-08 | ||
| Coils | 136 | 156 | 21 | – | – | |
| ProSiteProfiles | 161 | 196 | 36 | 9.942 | ||
| TIGRFAM | 163 | 195 | 33 | 0.0017 | ||
| SUPERFAMILY | 170 | 365 | 196 | 2.78E-07 | ||
| ProSiteProfiles | 197 | 230 | 34 | 8.024 | ||
| Pfam | 200 | 243 | 44 | 5.80E-10 | ||
| TIGRFAM | 200 | 231 | 32 | 0.001 | ||
| Gene3D | 212 | 415 | 204 | 2.60E-06 | ||
| ProSiteProfiles | 231 | 265 | 35 | 11.827 | ||
| TIGRFAM | 233 | 267 | 35 | 1.50E-07 | ||
| Pfam | 265 | 313 | 49 | 4.60E-15 | ||
| ProSiteProfiles | 266 | 300 | 35 | 12.025 | ||
| TIGRFAM | 268 | 302 | 35 | 9.00E-09 | ||
| ProSiteProfiles | 301 | 335 | 35 | 11.992 | ||
| TIGRFAM | 304 | 335 | 32 | 4.50E-06 | ||
| ProSiteProfiles | 336 | 370 | 35 | 9.745 | ||
| Pfam | 343 | 368 | 26 | 0.035 | ||
| TIGRFAM | 343 | 371 | 29 | 2.60E-04 | ||
| Pfam | 378 | 427 | 50 | 1.40E-12 | ||
| ProSiteProfiles | 379 | 413 | 35 | 10.786 | ||
| TIGRFAM | 381 | 414 | 34 | 2.10E-05 | ||
| ProSiteProfiles | 414 | 448 | 35 | 10.786 | ||
| TIGRFAM | 416 | 445 | 30 | 2.50E-07 | ||
| Pfam | 464 | 492 | 29 | 1.20E-06 | ||
| ProSiteProfiles | 464 | 498 | 35 | 11.038 | ||
| Gene3D | 465 | 493 | 29 | 2.60E-06 | ||
| TIGRFAM | 468 | 495 | 28 | 8.80E-05 | ||
| ProSiteProfiles | 550 | 584 | 35 | 5.47 | ||
| PANTHER | 556 | 612 | 57 | 6.40E-159 | – | |
| ProSiteProfiles | 585 | 619 | 35 | 9.514 | ||
| Pfam | 588 | 617 | 30 | 0.0096 | ||
| TIGRFAM | 588 | 617 | 30 | 0.0016 | ||
| Phobius | 612 | 632 | 21 | – | – | |
| ProSiteProfiles | 620 | 650 | 31 | 5.36 | ||
| Phobius | 633 | 710 | 78 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0079559.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0079559.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.