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Lj0g3v0083039.1

Overview

Field Value
Gene ID Lj0g3v0083039
Transcript ID Lj0g3v0083039.1
Lotus japonicus genome version MG20 v3.0
Description homeobox protein knotted-1-like 2-like [Glycine max] gi|388556558|ref|NP_001253999.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11850:SF64
8 305 298 2.20E-217 –
PANTHER
PTHR11850
8 305 298 2.20E-217 –
SMART
SM01255
43 87 45 1.60E-21
IPR005540
Pfam
PF03790
44 86 43 1.50E-22
IPR005540
SMART
SM01256
94 145 52 8.90E-30
IPR005541
Pfam
PF03791
99 144 46 1.40E-24
IPR005541
MobiDBLite
mobidb-lite
155 183 29 – –
SMART
SM01188
186 207 22 1.40E-06
IPR005539
Pfam
PF03789
186 207 22 7.10E-09
IPR005539
ProSiteProfiles
PS51213
186 206 21 10.999
IPR005539
ProSiteProfiles
PS50071
206 269 64 12.989
IPR001356
SUPERFAMILY
SSF46689
207 281 75 1.07E-19
IPR009057
SMART
SM00389
208 273 66 2.10E-13
IPR001356
Gene3D
G3DSA:1.10.10.60
211 272 62 1.70E-27
IPR009057
CDD
cd00086
218 270 53 3.36E-12 –
Pfam
PF05920
226 265 40 8.10E-17
IPR008422
ProSitePatterns
PS00027
244 267 24 –
IPR017970

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj0g3v0083039.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0083039.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.