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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0090899 |
| Transcript ID | Lj0g3v0090899.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Small nuclear ribonucleoprotein-like protein [Medicago truncatula] gi|357521399|ref|XP_003630988.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 104 | 104 | 3.80E-88 | ||
| CDD | 14 | 103 | 90 | 5.83E-61 | – | |
| Gene3D | 16 | 104 | 89 | 5.40E-38 | – | |
| SUPERFAMILY | 17 | 102 | 86 | 8.96E-26 | ||
| SMART | 22 | 101 | 80 | 5.10E-20 | ||
| Pfam | 25 | 99 | 75 | 5.10E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | RNA splicing | The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. | ||
| Cellular component | Small nuclear ribonucleoprotein complex | A complex composed of RNA of the small nuclear RNA (snRNA) class and protein, found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP or U4/U6 snRNP. Many, but not all, of these complexes are involved in splicing of nuclear mRNAs. |
Expression pattern of Lj0g3v0090899.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0090899.1, powered by CORGI.
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