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Sm_D2
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | RNA splicing | The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. | ||
| Cellular component | Small nuclear ribonucleoprotein complex | A complex composed of RNA of the small nuclear RNA (snRNA) class and protein, found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP or U4/U6 snRNP. Many, but not all, of these complexes are involved in splicing of nuclear mRNAs. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Small nuclear ribonucleoprotein-like protein [Medicago truncatula] gi|357521399|ref|XP_003630988.1| | 9 | ||
| – | PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like [Cucumis sativus] gi|449457536|ref|XP_004146504.1| | 9 | ||
| – | Small nuclear ribonucleoprotein; TAIR: AT2G47640.2 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2; TrEMBL-Plants: tr|G7LBH6|G7LBH6_MEDTR Small nuclear ribonucleoprotein; Found in the gene: LotjaGi4g1v0349000 | 11 | ||
| – | Small nuclear ribonucleoprotein; TAIR: AT2G47640.2 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2; TrEMBL-Plants: tr|G7LBH6|G7LBH6_MEDTR Small nuclear ribonucleoprotein; Found in the gene: LotjaGi4g1v0349000 | 11 | ||
| – | Small nuclear ribonucleoprotein family protein; TAIR: AT2G47640.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2; TrEMBL-Plants: tr|A0A0A0KUK4|A0A0A0KUK4_CUCSA Uncharacterized protein; Found in the gene: LotjaGi4g1v0458800 | 10 | ||
| – | Small nuclear ribonucleoprotein family protein; TAIR: AT2G47640.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2; TrEMBL-Plants: tr|A0A0A0KUK4|A0A0A0KUK4_CUCSA Uncharacterized protein; Found in the gene: LotjaGi4g1v0458800 | 10 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd01720 | CDD | 1 | 16.67 |