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Lj0g3v0093109.2

Overview

Field Value
Gene ID Lj0g3v0093109
Transcript ID Lj0g3v0093109.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Uncharacterized protein isoform 1 [Theobroma cacao] gi|508709078|gb|EOY00975.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.10.10.10
1 59 59 9.20E-09
IPR011991
SUPERFAMILY
SSF46785
1 58 58 1.63E-07
IPR011991
ProSiteProfiles
PS51504
1 64 64 18.749
IPR005818
Pfam
PF00538
1 57 57 3.90E-06
IPR005818
SMART
SM00526
1 58 58 0.0054
IPR005818
MobiDBLite
mobidb-lite
67 99 33 – –
MobiDBLite
mobidb-lite
124 182 59 – –
MobiDBLite
mobidb-lite
208 276 69 – –
MobiDBLite
mobidb-lite
298 415 118 – –
PRINTS
PR00929
327 337 11 1.30E-07
IPR017956
SMART
SM00384
327 339 13 1.7
IPR017956
PRINTS
PR00929
364 375 12 1.30E-07
IPR017956
SMART
SM00384
366 378 13 3.7
IPR017956
PRINTS
PR00929
392 402 11 1.30E-07
IPR017956
SMART
SM00384
394 406 13 79
IPR017956

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006334
Biological process Nucleosome assembly The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
Subterm of
Part of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj0g3v0093109.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0093109.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.