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Lj0g3v0125859.1

Overview

Field Value
Gene ID Lj0g3v0125859
Transcript ID Lj0g3v0125859.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cell division cycle protein 48 homolog [Cicer arietinum] gi|502121999|ref|XP_004497529.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:2.40.40.20
1 24 24 4.60E-07 –
PANTHER
PTHR23077:SF82
1 620 620 0 –
PANTHER
PTHR23077
1 620 620 0 –
TIGRFAM
TIGR01243
2 680 679 7.40E-258
IPR005938
SUPERFAMILY
SSF54585
24 116 93 4.25E-33
IPR029067
Gene3D
G3DSA:3.10.330.10
25 116 92 2.20E-43
IPR029067
SMART
SM01072
42 108 67 6.10E-15
IPR004201
Pfam
PF02933
44 107 64 1.60E-11
IPR004201
SUPERFAMILY
SSF52540
116 378 263 3.01E-67
IPR027417
Gene3D
G3DSA:3.40.50.300
119 393 275 1.40E-94
IPR027417
CDD
cd00009
123 286 164 1.03E-31 –
SMART
SM00382
153 289 137 3.00E-23
IPR003593
Pfam
PF00004
157 286 130 1.80E-47
IPR003959
ProSitePatterns
PS00674
257 275 19 –
IPR003960
SUPERFAMILY
SSF52540
388 677 290 3.83E-74
IPR027417
Gene3D
G3DSA:3.40.50.300
394 571 178 5.90E-66
IPR027417
CDD
cd00009
396 563 168 1.54E-30 –
SMART
SM00382
426 565 140 2.60E-24
IPR003593
Pfam
PF00004
430 563 134 1.40E-45
IPR003959
ProSitePatterns
PS00674
533 551 19 –
IPR003960
Gene3D
G3DSA:1.10.8.60
572 664 93 2.80E-20 –
PANTHER
PTHR23077
641 689 49 0 –
PANTHER
PTHR23077:SF82
641 689 49 0 –
MobiDBLite
mobidb-lite
702 723 22 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj0g3v0125859.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0125859.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.