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IPR004201

Source: InterPro

Description

IPR004201 is a CDC48, domain 2.

<p>The CDC48 N-terminal domain is a protein domain found in AAA ATPases including cell division protein 48 (CDC48), VCP-like ATPase (VAT) and N-ethylmaleimide sensitive fusion protein. It is a substrate recognition domain which binds polypeptides, prevents protein aggregation, and catalyses refolding of permissive substrates. It is composed of two equally sized subdomains. The amino-terminal subdomain forms a double-psi β-barrel whose pseudo-twofold symmetry is mirrored by an internal sequence repeat of 42 residues. The carboxy-terminal subdomain forms a novel six-stranded β-clamp fold [[cite:PUB00007420]]. Together these subdomains form a kidney-shaped structure.</p> <p>This entry represents the carboxy-terminal subdomain.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 23

Transcript Name Description Predicted domains Domain count
Lj0g3v0125859.1
– PREDICTED: cell division cycle protein 48 homolog [Cicer arietinum] gi|502121999|ref|XP_004497529.1|
Domains
23
Lj0g3v0306179.1
– PREDICTED: cell division cycle protein 48 homolog [Glycine max] gi|356543494|ref|XP_003540195.1|
Domains
13
Lj1g3v0342010.1
– PREDICTED: cell division cycle protein 48 homolog [Glycine max] gi|356508699|ref|XP_003523092.1|
Domains
28
Lj1g3v4591140.1
– PREDICTED: cell division cycle protein 48 homolog [Glycine max] gi|356572464|ref|XP_003554388.1|
Domains
7
Lj3g3v3067920.1
– PREDICTED: cell division cycle protein 48 homolog [Glycine max] gi|356543494|ref|XP_003540195.1|
Domains
27
Lj4g3v0451140.1
– PREDICTED: vesicle-fusing ATPase-like isoform X3 [Cicer arietinum] gi|502142631|ref|XP_004505053.1|
Domains
12
LotjaGi1g1v0177300.1
– Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300
Domains
30
LotjaGi1g1v0177300.2
– Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300
Domains
30
LotjaGi1g1v0177300.4
– Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300
Domains
30
LotjaGi1g1v0177300.5
– Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300
Domains
30
LotjaGi1g1v0177300.6
– Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300
Domains
30
LotjaGi1g1v0177300.7
– Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JXA0|I1JXA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0177300
Domains
30
LotjaGi1g1v0689100.1
– Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1JPP3|I1JPP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0689100
Domains
30
LotjaGi1g1v0689100.2
– Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1NAA5|I1NAA5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0689100
Domains
25
LotjaGi1g1v0689100.3
– Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|I1NAA5|I1NAA5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0689100
Domains
25
LotjaGi3g1v0487400.1
– Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|A0A151TNG4|A0A151TNG4_CAJCA Cell division cycle protein 48 isogeny; Found in the gene: LotjaGi3g1v0487400
Domains
29
LotjaGi3g1v0487400.2
– Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|A0A151TNG4|A0A151TNG4_CAJCA Cell division cycle protein 48 isogeny; Found in the gene: LotjaGi3g1v0487400
Domains
29
LotjaGi3g1v0487400.3
– Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|A0A151TNG4|A0A151TNG4_CAJCA Cell division cycle protein 48 isogeny; Found in the gene: LotjaGi3g1v0487400
Domains
29
LotjaGi3g1v0487400.4
– Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|A0A151TNG4|A0A151TNG4_CAJCA Cell division cycle protein 48 isogeny; Found in the gene: LotjaGi3g1v0487400
Domains
29
LotjaGi3g1v0487400.5
– Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|A0A151TNG4|A0A151TNG4_CAJCA Cell division cycle protein 48 isogeny; Found in the gene: LotjaGi3g1v0487400
Domains
29
LotjaGi3g1v0487400.6
– Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|A0A151TNG4|A0A151TNG4_CAJCA Cell division cycle protein 48 isogeny; Found in the gene: LotjaGi3g1v0487400
Domains
29
LotjaGi5g1v0081500.1
– Cell division cycle protein 48 like; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|Q9LZF6|CD48E_ARATH Cell division control protein 48 homolog E; TrEMBL-Plants: tr|I1JPP3|I1JPP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0081500
Domains
30
LotjaGi5g1v0081500.3
– ATP-dependent zinc metalloprotease FtsH; TAIR: AT5G03340.1 ATPase, AAA-type, CDC48 protein; Swiss-Prot: sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog; TrEMBL-Plants: tr|A0A072VC98|A0A072VC98_MEDTR ATPase, AAA-type, CDC48 protein; Found in the gene: LotjaGi5g1v0081500
Domains
22

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd00009 CDD 1 4.35