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Lj0g3v0198479.1

Overview

Field Value
Gene ID Lj0g3v0198479
Transcript ID Lj0g3v0198479.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DNA (cytosine-5)-methyltransferase CMT3-like isoform X2 [Cicer arietinum] gi|502164095|ref|XP_004513047.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10629
1 253 253 0 –
ProSiteProfiles
PS51038
1 95 95 13.808
IPR001025
PANTHER
PTHR10629:SF28
1 253 253 0 –
MobiDBLite
mobidb-lite
98 134 37 – –
Gene3D
G3DSA:3.40.50.150
134 193 60 3.50E-57
IPR029063
SUPERFAMILY
SSF53335
138 190 53 4.54E-51
IPR029063
ProSiteProfiles
PS51679
139 609 471 29.59
IPR001525
PRINTS
PR00105
140 156 17 4.90E-12
IPR001525
SUPERFAMILY
SSF54160
242 308 67 7.85E-06
IPR016197
Gene3D
G3DSA:2.40.50.40
245 301 57 3.30E-08 –
CDD
cd00024
249 301 53 0.00144844 –
SUPERFAMILY
SSF53335
293 485 193 4.54E-51
IPR029063
Gene3D
G3DSA:3.40.50.150
302 497 196 3.50E-57
IPR029063
Pfam
PF00145
312 508 197 4.70E-21
IPR029063
PANTHER
PTHR10629:SF28
315 609 295 0 –
PANTHER
PTHR10629
315 609 295 0 –
ProSitePatterns
PS00094
318 330 13 –
IPR018117
PRINTS
PR00105
361 375 15 4.90E-12
IPR001525
PRINTS
PR00105
407 420 14 4.90E-12
IPR001525
SUPERFAMILY
SSF53335
520 552 33 4.54E-51
IPR029063
SUPERFAMILY
SSF53335
587 609 23 4.54E-51
IPR029063

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003682
Molecular function Chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
Subterm of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj0g3v0198479.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0198479.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.