Domain Predictions — View

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PS00094

Source: ProSitePatterns

Description

C-5 cytosine-specific DNA methylases active site.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 15

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0024609.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA (cytosine-5)-methyltransferase CMT2-like [Cicer arietinum] gi\|502154028\|ref\|XP_004509555.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.40.50.150 G3DSA:3.90.120.10 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023780 IPR029063 NON_CYTOPLASMIC_DOMAIN PF00145 PF00385 PF01426 PR00105 PS00094 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF34 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00298 SM00439 SSF53335 SSF54160 SignalP-TM_GRAM_POSITIVE TIGR00675 cd00024 mobidb-lite	33
Lj0g3v0198479.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA (cytosine-5)-methyltransferase CMT3-like isoform X2 [Cicer arietinum] gi\|502164095\|ref\|XP_004513047.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.40.50.150 IPR001025 IPR001525 IPR016197 IPR018117 IPR029063 PF00145 PR00105 PS00094 PS51038 PS51679 PTHR10629 PTHR10629:SF28 SSF53335 SSF54160 cd00024 mobidb-lite	18
Lj1g3v1290440.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA (cytosine-5)-methyltransferase CMT3-like isoform X2 [Cicer arietinum] gi\|502164095\|ref\|XP_004513047.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.40.50.150 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023779 IPR023780 IPR029063 PF00145 PF00385 PR00105 PS00094 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF28 SM00298 SSF53335 SSF54160 cd00024 mobidb-lite	25
Lj3g3v1010970.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA (cytosine-5)-methyltransferase [Medicago truncatula] gi\|357498929\|ref\|XP_003619753.1\|	Domains Coil G3DSA:3.40.50.150 G3DSA:3.90.120.10 IPR001025 IPR001525 IPR018117 IPR022702 IPR029063 IPR031303 PF00145 PF01426 PF12047 PR00105 PS00094 PS00095 PS51038 PS51679 PTHR10629 PTHR10629:SF36 SM00439 SSF53335 TIGR00675 cd04708 cd04712 mobidb-lite	25
LotjaGi1g1v0153100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	LINE-1 reverse transcriptase isogeny; TAIR: AT3G24255.7 RNA-directed DNA polymerase (reverse transcriptase)-related family protein; Swiss-Prot: sp\|P0C2F6\|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr\|A0A151QR03\|A0A151QR03_CAJCA Transposon TX1 uncharacterized; Found in the gene: LotjaGi1g1v0153100_LC	Domains CYTOPLASMIC_DOMAIN IPR000477 IPR018117 IPR043502 NON_CYTOPLASMIC_DOMAIN PF00078 PS00094 PS50878 PTHR46890 SSF56672 TRANSMEMBRANE	11
LotjaGi2g1v0168300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp\|P34881\|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1; TrEMBL-Plants: tr\|I1JXB2\|I1JXB2_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi2g1v0168300	Domains Coil G3DSA:2.30.30.490 G3DSA:3.40.50.150 G3DSA:3.90.120.20 IPR001025 IPR001525 IPR017198 IPR018117 IPR022702 IPR029063 IPR031303 IPR043151 PF00145 PF01426 PF12047 PIRSF037404 PR00105 PS00094 PS00095 PS51038 PS51679 PTHR10629 PTHR10629:SF48 SM00439 SSF53335 TIGR00675 cd04708 cd04712 mobidb-lite	29
LotjaGi2g1v0168300.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp\|P34881\|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1; TrEMBL-Plants: tr\|I1KCC0\|I1KCC0_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi2g1v0168300	Domains Coil G3DSA:2.30.30.490 G3DSA:3.40.50.150 G3DSA:3.90.120.20 IPR001025 IPR001525 IPR017198 IPR018117 IPR022702 IPR029063 IPR031303 IPR043151 PF00145 PF01426 PF12047 PIRSF037404 PR00105 PS00094 PS00095 PS51038 PS51679 PTHR10629 PTHR10629:SF48 SM00439 SSF53335 TIGR00675 cd04708 cd04712 mobidb-lite	29
LotjaGi2g1v0224800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT1G69770.1 chromomethylase 3; Swiss-Prot: sp\|Q94F88\|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3; TrEMBL-Plants: tr\|K7K149\|K7K149_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi2g1v0224800	Domains G3DSA:2.30.30.490 G3DSA:3.40.50.150 G3DSA:3.90.120.20 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023779 IPR023780 IPR029063 IPR043151 NON_CYTOPLASMIC_DOMAIN PF00145 PF00385 PF01426 PR00105 PS00094 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF42 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00298 SM00439 SSF53335 SSF54160 SignalP-TM TIGR00675 cd18635 mobidb-lite	36
LotjaGi3g1v0150100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp\|P34881\|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1; TrEMBL-Plants: tr\|I1JXB2\|I1JXB2_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi3g1v0150100	Domains Coil G3DSA:2.30.30.490 G3DSA:3.40.50.150 G3DSA:3.90.120.20 IPR001025 IPR001525 IPR017198 IPR018117 IPR022702 IPR029063 IPR031303 IPR043151 PF00145 PF01426 PF12047 PIRSF037404 PR00105 PS00094 PS00095 PS51038 PS51679 PTHR10629 PTHR10629:SF48 SM00439 SSF53335 TIGR00675 cd04708 cd04712 mobidb-lite	29
LotjaGi3g1v0150100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp\|P34881\|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1; TrEMBL-Plants: tr\|I1KCC0\|I1KCC0_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi3g1v0150100	Domains Coil G3DSA:2.30.30.490 G3DSA:3.40.50.150 G3DSA:3.90.120.20 IPR001025 IPR001525 IPR017198 IPR018117 IPR022702 IPR029063 IPR031303 IPR043151 PF00145 PF01426 PF12047 PIRSF037404 PR00105 PS00094 PS00095 PS51038 PS51679 PTHR10629 PTHR10629:SF48 SM00439 SSF53335 TIGR00675 cd04708 cd04712 mobidb-lite	29
LotjaGi4g1v0146500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT4G19020.1 chromomethylase 2; Swiss-Prot: sp\|Q94F87\|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2; TrEMBL-Plants: tr\|A0A0B2PQY3\|A0A0B2PQY3_GLYSO Cytosine-specific methyltransferase; Found in the gene: LotjaGi4g1v0146500	Domains G3DSA:2.30.30.490 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023780 IPR029063 IPR043151 NON_CYTOPLASMIC_DOMAIN PF00145 PF00385 PF01426 PR00105 PS00094 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF34 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00298 SM00439 SSF53335 SSF54160 SignalP-TM TIGR00675 cd18635 mobidb-lite	32
LotjaGi4g1v0146500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT4G19020.1 chromomethylase 2; Swiss-Prot: sp\|Q94F87\|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2; TrEMBL-Plants: tr\|A0A0B2PQY3\|A0A0B2PQY3_GLYSO Cytosine-specific methyltransferase; Found in the gene: LotjaGi4g1v0146500	Domains G3DSA:2.30.30.490 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023780 IPR029063 IPR043151 NON_CYTOPLASMIC_DOMAIN PF00145 PF00385 PF01426 PR00105 PS00094 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF34 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00298 SM00439 SSF53335 SSF54160 SignalP-TM TIGR00675 cd18635 mobidb-lite	32
LotjaGi4g1v0243500_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	LINE-1 reverse transcriptase like; TAIR: AT3G24255.7 RNA-directed DNA polymerase (reverse transcriptase)-related family protein; Swiss-Prot: sp\|P0C2F6\|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr\|A0A151QR03\|A0A151QR03_CAJCA Transposon TX1 uncharacterized; Found in the gene: LotjaGi4g1v0243500_LC	Domains CYTOPLASMIC_DOMAIN IPR000477 IPR018117 NON_CYTOPLASMIC_DOMAIN PF00078 PS00094 PS50878 PTHR36617 TMhelix TRANSMEMBRANE	10
LotjaGi4g1v0407700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT1G69770.1 chromomethylase 3; Swiss-Prot: sp\|Q94F88\|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3; TrEMBL-Plants: tr\|K7K149\|K7K149_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi4g1v0407700	Domains G3DSA:2.30.30.490 G3DSA:3.40.50.150 G3DSA:3.90.120.20 IPR000953 IPR001025 IPR001525 IPR016197 IPR018117 IPR023779 IPR023780 IPR029063 IPR043151 NON_CYTOPLASMIC_DOMAIN PF00145 PF00385 PR00105 PS00094 PS00598 PS50013 PS51038 PS51679 PTHR10629 PTHR10629:SF42 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00298 SM00439 SSF53335 SSF54160 SignalP-TM TIGR00675 cd18635 mobidb-lite	35
LotjaGi5g1v0197200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp\|Q7Y1I7\|DNM1A_ORYSJ DNA (cytosine-5)-methyltransferase 1A; TrEMBL-Plants: tr\|A0A0B2RC49\|A0A0B2RC49_GLYSO Cytosine-specific methyltransferase; Found in the gene: LotjaGi5g1v0197200	Domains G3DSA:3.40.50.150 G3DSA:3.90.120.20 IPR001525 IPR018117 IPR029063 IPR031303 PF00145 PR00105 PS00094 PS00095 PS51679 PTHR10629 PTHR10629:SF48 SSF53335 TIGR00675	15

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
TIGR00675	TIGRFAM	1	6.67