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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000403
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 89 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.865s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0201989.1
n.a. PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Glycine max] gi|356495721|ref|XP_003516722.1| chr0 99944694 99948327 -
2 domain predictions
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Lj0g3v0307289.1
n.a. PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Glycine max] gi|356495721|ref|XP_003516722.1| chr0 160407531 160409807 -
2 domain predictions
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Lj0g3v0316729.1
n.a. Ubiquitin [Medicago truncatula] gi|358349317|ref|XP_003638685.1| chr0 165460767 165463414 +
2 domain predictions
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Lj0g3v0316729.2
n.a. Ubiquitin [Medicago truncatula] gi|358349317|ref|XP_003638685.1| chr0 165461781 165463414 +
2 domain predictions
 –
Lj1g3v0052210.1
n.a. PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max] gi|356539702|ref|XP_003538334.1| chr1 364710 407245 -
5 domain predictions
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Lj1g3v0052210.2
n.a. PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max] gi|356539702|ref|XP_003538334.1| chr1 364710 407245 -
5 domain predictions
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Lj1g3v0052210.3
n.a. PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max] gi|356539702|ref|XP_003538334.1| chr1 365938 407245 -
5 domain predictions
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Lj1g3v0984190.1
n.a. Phosphatidylinositol 4-kinase type 2-beta [Medicago truncatula] gi|357463917|ref|XP_003602240.1| chr1 12435629 12438829 -
2 domain predictions
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Lj1g3v1304780.2
n.a. PREDICTED: phosphatidylinositol 4-kinase beta 1-like isoform X3 [Cicer arietinum] gi|502137006|ref|XP_004502930.1| chr1 15710544 15722508 +
2 domain predictions
 –
Lj1g3v1304780.3
n.a. PREDICTED: phosphatidylinositol 4-kinase beta 1-like isoform X3 [Cicer arietinum] gi|502137006|ref|XP_004502930.1| chr1 15711238 15722508 +
5 domain predictions
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Lj1g3v1318170.1
n.a. PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Glycine max] gi|356525675|ref|XP_003531449.1| chr1 15936860 15943176 +
5 domain predictions
 –
Lj1g3v1318180.1
n.a. PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Fragaria vesca subsp]. vesca] gi|470103820|ref|XP_004288325.1| chr1 15942707 15944267 +
2 domain predictions
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Lj1g3v1454030.1
n.a. PREDICTED: dual specificity protein phosphatase PHS1-like [Cicer arietinum] gi|502133383|ref|XP_004501744.1| chr1 17440626 17448475 -
2 domain predictions
 –
Lj1g3v3076170.1
n.a. n.a. chr1 35001922 35008328 +
2 domain predictions
 –
Lj1g3v3404520.1
n.a. PREDICTED: phosphatidylinositol 4-kinase alpha-like isoform 1 [Glycine max] gi|356508450|ref|XP_003522970.1| chr1 39292084 39310363 -
5 domain predictions
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Lj1g3v3404520.2
n.a. PREDICTED: phosphatidylinositol 4-kinase alpha-like isoform 1 [Glycine max] gi|356508450|ref|XP_003522970.1| chr1 39292084 39300499 -
5 domain predictions
 –
Lj1g3v4081840.1
n.a. PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like isoform X1 [Cicer arietinum] gi|502107614|ref|XP_004493320.1| chr1 48209360 48212435 +
2 domain predictions
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Lj1g3v5034840.1
n.a. Ubiquitin [Medicago truncatula] gi|358349317|ref|XP_003638685.1| chr1 61553415 61556597 +
2 domain predictions
 –
Lj2g3v1203510.1
n.a. PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Cicer arietinum] gi|502094637|ref|XP_004490265.1| chr2 19394178 19397398 -
2 domain predictions
 –
Lj2g3v1414920.1
n.a. PREDICTED: phosphatidylinositol 3-kinase, root isoform-like isoform X1 [Cicer arietinum] gi|502092928|ref|XP_004489830.1| chr2 22191929 22201896 -
5 domain predictions
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Lj2g3v1695260.1
n.a. PREDICTED: transformation/transcription domain-associated protein-like isoform X1 [Cicer arietinum] gi|502161350|ref|XP_004512131.1| chr2 26178306 26207647 -
5 domain predictions
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Lj2g3v1695260.2
n.a. PREDICTED: transformation/transcription domain-associated protein-like isoform X1 [Cicer arietinum] gi|502161350|ref|XP_004512131.1| chr2 26178306 26207647 -
5 domain predictions
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Lj2g3v2089560.1
n.a. PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Glycine max] gi|356495721|ref|XP_003516722.1| chr2 31611684 31614711 -
2 domain predictions
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Lj3g3v3337380.1
n.a. PREDICTED: serine/threonine-protein kinase SMG1 [Glycine max] gi|356541123|ref|XP_003539032.1| chr3 40671088 40687710 +
5 domain predictions
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Lj3g3v3337380.2
n.a. PREDICTED: serine/threonine-protein kinase SMG1 [Glycine max] gi|356541123|ref|XP_003539032.1| chr3 40671088 40690226 +
5 domain predictions
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Lj3g3v3337380.4
n.a. PREDICTED: serine/threonine-protein kinase SMG1 [Glycine max] gi|356541123|ref|XP_003539032.1| chr3 40678057 40696398 +
5 domain predictions
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Lj4g3v0165070.1
n.a. PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase ATM-like [Cicer arietinum] gi|502133902|ref|XP_004501929.1| chr4 1932494 1943667 -
5 domain predictions
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Lj4g3v2742890.1
n.a. PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Fragaria vesca subsp]. vesca] gi|470103820|ref|XP_004288325.1| chr4 36867123 36868683 -
2 domain predictions
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Lj4g3v2742900.1
n.a. PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Glycine max] gi|356525675|ref|XP_003531449.1| chr4 36868214 36874530 -
5 domain predictions
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Lj4g3v2882030.1
n.a. PREDICTED: dual specificity protein phosphatase PHS1-like [Cicer arietinum] gi|502139515|ref|XP_004503799.1| chr4 38497942 38503834 -
2 domain predictions
 –
Lj4g3v2882030.2
n.a. Dual specificity protein phosphatase [Medicago truncatula] gi|357520579|ref|XP_003630578.1| chr4 38497942 38501361 -
2 domain predictions
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Lj5g3v2258320.1
n.a. PREDICTED: serine/threonine-protein kinase ATR-like [Glycine max] gi|356534437|ref|XP_003535761.1| chr5 32732549 32745177 -
5 domain predictions
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Lj6g3v0227610.1
n.a. PREDICTED: transformation/transcription domain-associated protein-like [Glycine max] gi|356496647|ref|XP_003517177.1| chr6 2727327 2735164 -
5 domain predictions
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LotjaGi1g1v0180100.2
n.a. Serine/threonine-protein kinase; TAIR: AT3G48190.2 Serine/Threonine-kinase ATM-like protein; Swiss-Prot: sp|Q9M3G7|ATM_ARATH Serine/threonine-protein kinase ATM; TrEMBL-Plants: tr|A0A0R0KG32|A0A0R0KG32_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0180100 LjG1.1_chr1 34763786 34839512 +
4 domain predictions
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LotjaGi1g1v0285300.1
n.a. phosphatidylinositol 4-kinase gamma-like protein; TAIR: AT5G24240.1 phosphatidylinositol 4-kinase gamma-like protein; Swiss-Prot: sp|Q9FNF8|P4KG3_ARATH Phosphatidylinositol 4-kinase gamma 3; TrEMBL-Plants: tr|A0A0B2QD11|A0A0B2QD11_GLYSO Putative phosphatidylinositol 4-kinase type 2-beta; Found in the gene: LotjaGi1g1v0285300 LjG1.1_chr1 69348946 69352659 -
2 domain predictions
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LotjaGi1g1v0318700.1
n.a. Phosphatidylinositol 4-kinase family protein; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|K7KLG9|K7KLG9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0318700 LjG1.1_chr1 76772668 76785107 +
4 domain predictions
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LotjaGi1g1v0318700.2
n.a. Phosphatidylinositol 4-kinase, putative; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|K7KLG8|K7KLG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0318700 LjG1.1_chr1 76773262 76782719 +
2 domain predictions
 –
LotjaGi1g1v0318700.3
n.a. Phosphatidylinositol 4-kinase family protein; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|K7KLG9|K7KLG9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0318700 LjG1.1_chr1 76773262 76784049 +
4 domain predictions
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LotjaGi1g1v0318700.4
n.a. Phosphatidylinositol 4-kinase family protein; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|K7KLG8|K7KLG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0318700 LjG1.1_chr1 76773262 76784049 +
4 domain predictions
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LotjaGi1g1v0318700.5
n.a. Phosphatidylinositol 4-kinase, putative; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|K7KLG8|K7KLG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0318700 LjG1.1_chr1 76773262 76784049 +
2 domain predictions
 –
LotjaGi1g1v0318700.6
n.a. Phosphatidylinositol 4-kinase family protein; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|K7KLG8|K7KLG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0318700 LjG1.1_chr1 76773262 76784744 +
4 domain predictions
 –
LotjaGi1g1v0318700.7
n.a. Phosphatidylinositol 4-kinase, putative; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|K7KLG8|K7KLG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0318700 LjG1.1_chr1 76773262 76784755 +
2 domain predictions
 –
LotjaGi1g1v0318700.8
n.a. Phosphatidylinositol 4-kinase; TAIR: AT5G64070.1 phosphatidylinositol 4-OH kinase beta1; Swiss-Prot: sp|Q9FMJ0|P4KB1_ARATH Phosphatidylinositol 4-kinase beta 1; TrEMBL-Plants: tr|K7KLG9|K7KLG9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0318700 LjG1.1_chr1 76776028 76784049 +
4 domain predictions
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LotjaGi1g1v0520500.1
n.a. Phosphatidylinositol 4-kinase; TAIR: AT2G03890.1 phosphoinositide 4-kinase gamma 7; Swiss-Prot: sp|Q9SI52|P4KG7_ARATH Phosphatidylinositol 4-kinase gamma 7; TrEMBL-Plants: tr|I1N4S6|I1N4S6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0520500 LjG1.1_chr1 104448468 104453045 +
2 domain predictions
 –
LotjaGi1g1v0520500.2
n.a. Phosphatidylinositol 4-kinase; TAIR: AT2G03890.1 phosphoinositide 4-kinase gamma 7; Swiss-Prot: sp|Q9SI52|P4KG7_ARATH Phosphatidylinositol 4-kinase gamma 7; TrEMBL-Plants: tr|I1N4S6|I1N4S6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0520500 LjG1.1_chr1 104448565 104456657 +
2 domain predictions
 –
LotjaGi1g1v0520500.3
n.a. Phosphatidylinositol 4-kinase; TAIR: AT2G03890.1 phosphoinositide 4-kinase gamma 7; Swiss-Prot: sp|Q9SI52|P4KG7_ARATH Phosphatidylinositol 4-kinase gamma 7; TrEMBL-Plants: tr|I1N4S6|I1N4S6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0520500 LjG1.1_chr1 104450263 104452140 +
2 domain predictions
 –
LotjaGi1g1v0570200.1
n.a. Phosphatidylinositol 4-kinase family protein; TAIR: AT1G49340.1 Phosphatidylinositol 3- and 4-kinase family protein; Swiss-Prot: sp|Q9SXA1|P4KA1_ARATH Phosphatidylinositol 4-kinase alpha 1; TrEMBL-Plants: tr|I1JSQ3|I1JSQ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0570200 LjG1.1_chr1 110309598 110330597 -
4 domain predictions
 –
LotjaGi1g1v0570200.2
n.a. Phosphatidylinositol 4-kinase family protein; TAIR: AT1G49340.1 Phosphatidylinositol 3- and 4-kinase family protein; Swiss-Prot: sp|Q9SXA1|P4KA1_ARATH Phosphatidylinositol 4-kinase alpha 1; TrEMBL-Plants: tr|I1JSQ3|I1JSQ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0570200 LjG1.1_chr1 110312717 110330358 -
4 domain predictions
 –
LotjaGi1g1v0657300.1
n.a. Phosphatidylinositol 4-kinase gamma-like protein; TAIR: AT2G40850.1 phosphoinositide 4-kinase gamma 1; Swiss-Prot: sp|O22199|P4KG1_ARATH Phosphatidylinositol 4-kinase gamma 1; TrEMBL-Plants: tr|A0A1J7HR91|A0A1J7HR91_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0657300 LjG1.1_chr1 121741598 121745233 +
2 domain predictions
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LotjaGi1g1v0657300.2
n.a. Phosphatidylinositol 4-kinase gamma-like protein; TAIR: AT2G40850.1 phosphoinositide 4-kinase gamma 1; Swiss-Prot: sp|O22199|P4KG1_ARATH Phosphatidylinositol 4-kinase gamma 1; TrEMBL-Plants: tr|A0A1J7HR91|A0A1J7HR91_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0657300 LjG1.1_chr1 121741600 121745305 +
2 domain predictions
 –