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Lj0g3v0248479.1

Overview

Field Value
Gene ID Lj0g3v0248479
Transcript ID Lj0g3v0248479.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like isoform X1 [Cicer arietinum] gi|502089135|ref|XP_004488827.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23115
16 83 68 3.60E-243 –
PANTHER
PTHR23115:SF164
16 83 68 3.60E-243 –
SUPERFAMILY
SSF52540
23 81 59 8.20E-39
IPR027417
Gene3D
G3DSA:3.40.50.300
24 239 216 2.30E-69
IPR027417
ProSiteProfiles
PS51722
30 239 210 33.488
IPR000795
Pfam
PF00009
32 236 205 3.60E-25 –
CDD
cd01888
33 240 208 2.58E-131 –
PRINTS
PR00315
34 47 14 2.20E-11
IPR000795
SUPERFAMILY
SSF52540
120 242 123 8.20E-39
IPR027417
PANTHER
PTHR23115
120 460 341 3.60E-243 –
PANTHER
PTHR23115:SF164
120 460 341 3.60E-243 –
PRINTS
PR00315
123 133 11 2.20E-11
IPR000795
PRINTS
PR00315
139 150 12 2.20E-11
IPR000795
PRINTS
PR00315
177 186 10 2.20E-11
IPR000795
SUPERFAMILY
SSF50447
240 354 115 3.53E-36
IPR009000
CDD
cd03688
241 354 114 3.71E-67 –
Gene3D
G3DSA:2.40.30.10
244 355 112 8.00E-36 –
Pfam
PF03144
268 350 83 3.90E-08
IPR004161
SUPERFAMILY
SSF50465
355 452 98 9.59E-31
IPR009001
CDD
cd15490
357 451 95 2.46E-43
IPR015256
Gene3D
G3DSA:2.40.30.10
357 452 96 1.70E-38 –
Pfam
PF09173
362 451 90 4.70E-36
IPR015256

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj0g3v0248479.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0248479.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.