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Lj0g3v0298839.1

Overview

Field Value
Gene ID Lj0g3v0298839
Transcript ID Lj0g3v0298839.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable small nuclear ribonucleoprotein F [Glycine max] gi|356562363|ref|XP_003549441.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11021
1 77 77 9.50E-54 –
PIRSF
PIRSF006609
1 77 77 1.10E-37
IPR016487
CDD
cd01722
7 75 69 1.52E-47 –
SUPERFAMILY
SSF50182
8 75 68 7.36E-23
IPR010920
SMART
SM00651
10 75 66 3.80E-25
IPR001163
Gene3D
G3DSA:2.30.30.100
11 76 66 8.30E-34 –
Pfam
PF01423
11 73 63 6.10E-22
IPR001163

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000398
Biological process MRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
Subterm of
GO:0005732
Cellular component Small nucleolar ribonucleoprotein complex A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj0g3v0298839.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0298839.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.