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Lj1g3v0084860.1

Overview

Field Value
Gene ID Lj1g3v0084860
Transcript ID Lj1g3v0084860.1
Lotus japonicus genome version MG20 v3.0
Description Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana] gi|334186543|ref|NP_193228.6|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
282 361 80 – –
PANTHER
PTHR24098:SF10
352 493 142 0 –
PANTHER
PTHR24098
352 493 142 0 –
MobiDBLite
mobidb-lite
385 404 20 – –
MobiDBLite
mobidb-lite
493 541 49 – –
PANTHER
PTHR24098
525 1154 630 0 –
PANTHER
PTHR24098:SF10
525 1154 630 0 –
Pfam
PF16135
625 695 71 4.50E-25
IPR032308
SUPERFAMILY
SSF57903
726 781 56 1.31E-13
IPR011011
Gene3D
G3DSA:3.30.40.10
729 778 50 1.90E-14
IPR013083
ProSiteProfiles
PS50016
733 778 46 10.033
IPR019787
SMART
SM00249
735 776 42 5.00E-12
IPR001965
ProSitePatterns
PS01359
736 775 40 –
IPR019786
Pfam
PF00628
736 778 43 2.20E-07
IPR019787
CDD
cd15532
736 775 40 2.70E-16 –
Gene3D
G3DSA:3.40.630.30
927 1012 86 1.00E-04
IPR016181
MobiDBLite
mobidb-lite
1071 1515 445 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj1g3v0084860.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v0084860.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.