Domain Predictions — View — Lotus Base

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cd15532

Source: CDD

Description

PHD2_CHD_II

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 13

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v0084860.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana] gi\|334186543\|ref\|NP_193228.6\|	Domains G3DSA:3.30.40.10 G3DSA:3.40.630.30 IPR001965 IPR011011 IPR013083 IPR016181 IPR019786 IPR019787 IPR032308 PF00628 PF16135 PS01359 PS50016 PTHR24098 PTHR24098:SF10 SM00249 SSF57903 cd15532 mobidb-lite	19
Lj3g3v1128960.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromodomain-helicase-DNA-binding protein [Medicago truncatula] gi\|357472039\|ref\|XP_003606304.1\|	Domains G3DSA:3.30.40.10 IPR001965 IPR011011 IPR013083 IPR018501 IPR019786 IPR019787 IPR028942 PF00628 PF02791 PF15612 PS01359 PS50016 PS50827 PTHR22880 PTHR22880:SF167 SM00249 SM00571 SSF57903 cd15489 cd15532 mobidb-lite	22
Lj3g3v3016640.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromodomain-helicase-DNA-binding protein [Medicago truncatula] gi\|357472039\|ref\|XP_003606304.1\|	Domains G3DSA:3.30.40.10 IPR001965 IPR011011 IPR013083 IPR018501 IPR019786 IPR019787 IPR028942 PF00628 PF02791 PF15612 PS01359 PS50016 PS50827 PTHR22880 PTHR22880:SF167 SM00249 SM00571 SSF57903 cd15489 cd15532 mobidb-lite	22
Lj4g3v0244050.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromatin remodeling complex subunit [Theobroma cacao] gi\|508704985\|gb\|EOX96881.1\|	Domains G3DSA:2.40.50.40 G3DSA:3.30.40.10 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR001965 IPR009463 IPR011011 IPR013083 IPR014001 IPR016197 IPR019786 IPR019787 IPR023780 IPR027417 PF00176 PF00271 PF00385 PF00628 PF06465 PS01359 PS50013 PS50016 PS51192 PS51194 PTHR10799 PTHR10799:SF725 SM00249 SM00298 SM00487 SM00490 SM01147 SSF52540 SSF54160 SSF57903 cd00024 cd00046 cd00079 cd11660 cd15532 mobidb-lite	42
Lj5g3v2046070.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana] gi\|334186543\|ref\|NP_193228.6\|	Domains G3DSA:3.30.40.10 IPR001965 IPR011011 IPR013083 IPR019786 IPR019787 IPR032308 PF00628 PF16135 PS01359 PS50016 PTHR24098 PTHR24098:SF10 SM00249 SSF57903 cd15532 mobidb-lite	17
LotjaGi1g1v0118400_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/FYVE/PHD zinc finger protein; TAIR: AT5G58610.4 PHD finger transcription factor; Swiss-Prot: sp\|F4IXE7\|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr\|G7JZJ8\|G7JZJ8_MEDTR PHD zinc finger protein; Found in the gene: LotjaGi1g1v0118400_LC	Domains G3DSA:3.30.40.10 G3DSA:3.40.630.30 IPR000182 IPR001965 IPR008395 IPR011011 IPR013083 IPR014002 IPR016181 IPR019787 IPR032308 PF00583 PF00628 PF05641 PF16135 PS50016 PS51186 PTHR31917 PTHR31917:SF69 SM00249 SM00743 SSF55729 SSF57903 cd04301 cd15532 mobidb-lite	26
LotjaGi2g1v0455500_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein, putative; TAIR: AT4G14920.3 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp\|F4IXE7\|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr\|V7CG62\|V7CG62_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0455500_LC	Domains G3DSA:3.30.40.10 IPR001965 IPR011011 IPR013083 IPR019786 IPR019787 IPR032308 PF00628 PF16135 PS01359 PS50016 PTHR46508 PTHR46508:SF3 SM00249 SSF57903 cd15532 mobidb-lite	17
LotjaGi2g1v0455500_LC.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein, putative; TAIR: AT4G14920.3 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp\|F4IXE7\|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr\|I1LFT6\|I1LFT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0455500_LC	Domains G3DSA:2.80.10.50 G3DSA:3.30.40.10 IPR001965 IPR011011 IPR013083 IPR019786 IPR019787 IPR032308 PF00628 PF16135 PS01359 PS50016 PTHR46508 PTHR46508:SF3 SM00249 SSF57903 cd15532 mobidb-lite	18
LotjaGi2g1v0455500_LC.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein, putative; TAIR: AT4G14920.3 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp\|F4IXE7\|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr\|I1LFT6\|I1LFT6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0455500_LC	Domains G3DSA:2.80.10.50 G3DSA:3.30.40.10 IPR001965 IPR011011 IPR013083 IPR019786 IPR019787 IPR032308 PF00628 PF16135 PS01359 PS50016 PTHR46508 PTHR46508:SF3 SM00249 SSF57903 cd15532 mobidb-lite	18
LotjaGi3g1v0481400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Nucleosome-remodeling factor subunit BPTF; TAIR: AT5G22760.1 PHD finger family protein; Swiss-Prot: sp\|F4JYC8\|PTM_ARATH DDT domain-containing protein PTM; TrEMBL-Plants: tr\|A0A1J7GFU1\|A0A1J7GFU1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0481400	Domains G3DSA:3.30.40.10 IPR001965 IPR011011 IPR013083 IPR018501 IPR019786 IPR019787 IPR028942 PF00628 PF02791 PF15612 PS01359 PS50016 PS50827 PTHR46508 PTHR46508:SF10 SM00249 SM00571 SSF57903 cd15489 cd15532 mobidb-lite	22
LotjaGi4g1v0022000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chromodomain-helicase-DNA-binding family protein; TAIR: AT5G44800.1 chromatin remodeling 4; Swiss-Prot: sp\|F4KBP5\|CHR4_ARATH Protein CHROMATIN REMODELING 4; TrEMBL-Plants: tr\|K7KPZ4\|K7KPZ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0022000	Domains G3DSA:1.10.10.60 G3DSA:1.20.920.10 G3DSA:2.40.50.40 G3DSA:3.40.50.10810 G3DSA:3.40.50.300 IPR000330 IPR000953 IPR001650 IPR001965 IPR009463 IPR011011 IPR014001 IPR016197 IPR019786 IPR019787 IPR023780 IPR027417 IPR036427 IPR038718 PF00176 PF00271 PF00385 PF00628 PF06465 PS01359 PS50013 PS50016 PS51192 PS51194 PTHR45623 PTHR45623:SF28 SM00249 SM00298 SM00487 SM00490 SM01147 SSF52540 SSF54160 SSF57903 cd11660 cd15532 cd17995 cd18659 cd18660 cd18793 mobidb-lite	46
LotjaGi5g1v0313800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein, putative; TAIR: AT4G14920.1 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; Swiss-Prot: sp\|F4IXE7\|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr\|A0A072VQ30\|A0A072VQ30_MEDTR RING/FYVE/PHD zinc finger protein, putative; Found in the gene: LotjaGi5g1v0313800	Domains G3DSA:3.30.40.10 IPR001965 IPR011011 IPR013083 IPR019786 IPR019787 IPR032308 PF00628 PF16135 PS01359 PS50016 PTHR46508 PTHR46508:SF3 SM00249 SSF57903 cd15532 mobidb-lite	17
LotjaGi6g1v0122700_LC.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RING/FYVE/PHD zinc finger protein; TAIR: AT5G58610.4 PHD finger transcription factor; Swiss-Prot: sp\|F4IXE7\|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr\|A0A1J7H9H6\|A0A1J7H9H6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0122700_LC	Domains Coil G3DSA:3.30.40.10 G3DSA:3.40.630.30 IPR000182 IPR001841 IPR001965 IPR008395 IPR011011 IPR013083 IPR014002 IPR016181 IPR019787 IPR032308 PF00628 PF05641 PF16135 PS50016 PS51186 PTHR31917 PTHR31917:SF69 SM00184 SM00249 SM00743 SSF55729 SSF57903 cd04301 cd15532 mobidb-lite	28

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	7.69