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| Field | Value |
|---|---|
| Gene ID | Lj1g3v0415250 |
| Transcript ID | Lj1g3v0415250.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | BAH domain,TFIIS helical bundle-like domain isoform 1 [Theobroma cacao] gi|508773378|gb|EOY20634.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | – | – | |
| ProSiteProfiles | 35 | 150 | 116 | 15.575 | ||
| SMART | 35 | 150 | 116 | 6.50E-20 | ||
| Pfam | 37 | 143 | 107 | 3.20E-05 | ||
| PANTHER | 53 | 825 | 773 | 0 | – | |
| PANTHER | 53 | 825 | 773 | 0 | – | |
| MobiDBLite | 176 | 246 | 71 | – | – | |
| Gene3D | 302 | 408 | 107 | 3.80E-28 | ||
| SUPERFAMILY | 304 | 408 | 105 | 1.44E-18 | ||
| SMART | 321 | 400 | 80 | 3.20E-17 | ||
| CDD | 323 | 399 | 77 | 5.41E-16 | – | |
| ProSiteProfiles | 324 | 401 | 78 | 20.377 | ||
| Pfam | 349 | 398 | 50 | 8.50E-11 | ||
| MobiDBLite | 403 | 450 | 48 | – | – | |
| MobiDBLite | 483 | 601 | 119 | – | – | |
| MobiDBLite | 649 | 669 | 21 | – | – | |
| MobiDBLite | 819 | 845 | 27 | – | – | |
| MobiDBLite | 888 | 914 | 27 | – | – | |
| MobiDBLite | 950 | 1041 | 92 | – | – | |
| PANTHER | 1065 | 1608 | 544 | 0 | – | |
| PANTHER | 1065 | 1608 | 544 | 0 | – | |
| MobiDBLite | 1530 | 1559 | 30 | – | – | |
| MobiDBLite | 1588 | 1608 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chromatin binding | Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of Lj1g3v0415250.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v0415250.1, powered by CORGI.
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