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Lj1g3v1384110.1

Overview

Field Value
Gene ID Lj1g3v1384110
Transcript ID Lj1g3v1384110.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40-like [Glycine max] gi|356521481|ref|XP_003529384.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11071:SF259
1 318 318 7.90E-244 –
PANTHER
PTHR11071
1 318 318 7.90E-244
IPR024936
Gene3D
G3DSA:2.40.100.10
3 171 169 1.30E-75
IPR029000
SUPERFAMILY
SSF50891
3 177 175 9.64E-74
IPR029000
CDD
cd01926
5 170 166 1.17E-98 –
ProSiteProfiles
PS50072
7 171 165 43.329
IPR002130
Pfam
PF00160
8 170 163 2.60E-50
IPR002130
PRINTS
PR00153
24 39 16 2.40E-36
IPR002130
ProSitePatterns
PS00170
56 73 18 –
IPR020892
PRINTS
PR00153
61 73 13 2.40E-36
IPR002130
PRINTS
PR00153
104 119 16 2.40E-36
IPR002130
PRINTS
PR00153
119 131 13 2.40E-36
IPR002130
PRINTS
PR00153
132 147 16 2.40E-36
IPR002130
SUPERFAMILY
SSF48452
208 354 147 2.42E-26
IPR011990
Gene3D
G3DSA:1.25.40.10
209 351 143 9.90E-30
IPR011990
SMART
SM00028
211 244 34 4.9
IPR019734
ProSiteProfiles
PS50005
211 244 34 6.874
IPR019734
ProSiteProfiles
PS50293
211 244 34 6.869
IPR013026
ProSiteProfiles
PS50293
263 330 68 15.964
IPR013026
SMART
SM00028
297 330 34 4.20E-08
IPR019734
ProSiteProfiles
PS50005
297 330 34 13.954
IPR019734
Pfam
PF00515
297 330 34 1.20E-08
IPR001440

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000413
Biological process Protein peptidyl-prolyl isomerization The modification of a protein by cis-trans isomerization of a proline residue.
Subterm of
GO:0003755
Molecular function Peptidyl-prolyl cis-trans isomerase activity Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006457
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Subterm of

Genome browser

LORE1 insertions 23

Expression data

Expression pattern

Expression pattern of Lj1g3v1384110.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1384110.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.